Files in phenoscape/scate-shortcourse
Short Course on Phylogenetic Comparative Analysis of Integrated Anatomical Traits

.RData
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/Functions_Discr_maps.R R/Functions_Stack_maps.R R/PARAMO_functions.R R/SMM_functions.R R/auto_functions.R R/get.dependencies.R R/workshop_functions.R README.md
data/BR.maps.rda
data/EF.maps.rda
data/IND.maps.rda
data/ParamoRevTemplate.rda
data/UBERON.rda
data/corhmm.fits.rda
data/fishtree.rda
data/siluriformes.rda
data/td.comb.rda
docs/404.html
docs/LICENSE.html
docs/articles/01_rphenoscape.html
docs/articles/01_rphenoscape_files/figure-html/unnamed-chunk-19-1.png
docs/articles/01_rphenoscape_files/figure-html/unnamed-chunk-20-1.png
docs/articles/01_scate-shortcourse.html
docs/articles/PARAMO.html
docs/articles/PARAMO.nb.html
docs/articles/PARAMO.nb_files/figure-html/unnamed-chunk-18-1.png
docs/articles/PARAMO.nb_files/figure-html/unnamed-chunk-18-2.png
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docs/articles/PARAMO_files/figure-html/unnamed-chunk-9-1.png
docs/articles/PARAMO_files/figure-html/unnamed-chunk-9-2.png
docs/articles/glossary.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Mk_Rev.html
docs/reference/RAC_query.html
docs/reference/Rplot001.png
docs/reference/amalgamate_deps.html
docs/reference/amalgamated_fits_corHMM.html
docs/reference/amalgamated_simmaps_phytools.html
docs/reference/comb2matrices.html
docs/reference/combNmatrices.html
docs/reference/discr_Simmap.html
docs/reference/discr_Simmap_all.html
docs/reference/dropDependentTraits.html
docs/reference/filter_coverage.html
docs/reference/get_descendants_chars.html
docs/reference/get_graph_matrix.html
docs/reference/get_onto_id.html
docs/reference/index.html
docs/reference/init_binary_matrix.html
docs/reference/init_char_matrix.html
docs/reference/list2edges.html
docs/reference/makeTraitTree.html
docs/reference/make_tree_eq.html
docs/reference/ontologyHeatMap.html
docs/reference/paramo.html
docs/reference/paramo.list.html
docs/reference/prepareMaps.html
docs/reference/prepareMapsRayDISC.html
docs/reference/prepareMapsRev.html
docs/reference/print_coverage.html
docs/reference/ratemat1.html
docs/reference/read_Simmap_Rev.html
docs/reference/recode_td.html
docs/reference/recode_traits.html
docs/reference/remove_indirect.html
docs/reference/strip_IRI.html
docs/reference/table2list.html
docs/reference/writeRevOntologyModels.html
docs/sitemap.xml
icon-paramo.png
man/Mk_Rev.Rd man/RAC_query.Rd man/amalgamate_deps.Rd man/amalgamated_fits_corHMM.Rd man/amalgamated_simmaps_phytools.Rd man/comb2matrices.Rd man/combNmatrices.Rd man/discr_Simmap.Rd man/discr_Simmap_all.Rd man/dropDependentTraits.Rd man/filter_coverage.Rd man/get_descendants_chars.Rd man/get_graph_matrix.Rd man/get_onto_id.Rd man/init_binary_matrix.Rd man/init_char_matrix.Rd man/list2edges.Rd man/makeTraitTree.Rd man/make_tree_eq.Rd man/ontologyHeatMap.Rd man/paramo.Rd man/paramo.list.Rd man/prepareMapsRayDISC.Rd man/prepareMapsRev.Rd man/print_coverage.Rd man/ratemat1.Rd man/read_Simmap_Rev.Rd man/recode_td.Rd man/recode_traits.Rd man/remove_indirect.Rd man/strip_IRI.Rd man/table2list.Rd man/writeRevOntologyModels.Rd
vignettes/.gitignore
vignettes/01_rphenoscape.Rmd vignettes/PARAMO.Rmd vignettes/glossary.Rmd
phenoscape/scate-shortcourse documentation built on Feb. 5, 2023, 12:59 a.m.