comb2matrices: Combining two matrices

In phenoscape/scate-shortcourse: Short Course on Phylogenetic Comparative Analysis of Integrated Anatomical Traits

Combining two matrices

Description

Combining two matrices. The parametric schem of matrice is defined by nattural numbers; different numbers = different rate parameters

Usage

comb2matrices(M1, M2, dependent.state = NULL, name.sep = "",
  diag.as = "")

Arguments

M1	matrix; if dependency true thenM1 controls M2
M2	matrix; if dependency true then: M2 depends on those states of M1 specified in dependent.state
dependent.state	state(s) of M1 that switches on matrix M2
name.sep	separator for state names
diag.as	hpopulate main diagonal with

Value

Matrix

Examples

M1<-matrix(c(-1,1,  2,-2),2,2,byrow=TRUE)
rownames(M1)<-colnames(M1)<-c("0","1")
M2<-matrix(c(-3,3,  4,-4),2,2,byrow=TRUE)
rownames(M2)<-colnames(M2)<-c("0","1")
comb2matrices(M1, M2, dependent.state=NULL)
comb2matrices(M1, M2, dependent.state=2)

phenoscape/scate-shortcourse documentation built on Feb. 5, 2023, 12:59 a.m.