amalgamate_deps: Generates a graph and model for traits given a dependency...
In phenoscape/scate-shortcourse: Short Course on Phylogenetic Comparative Analysis of Integrated Anatomical Traits
View source: R/auto_functions.R
amalgamate_deps R Documentation
Generates a graph and model for traits given a dependency matrix
Description
Generates a graph and model for traits given a dependency matrix
Usage
amalgamate_deps(dep_mat)
Arguments
dep_mat
A dependency matrix
Details
The dependency matrix can come from 'rphenoscape::pa_dep_matrix' or be user generated
Value
A list of:
$M Transition matrices for the Structured-Hidden State Markov Models that can be run in RevBayes,
corHMM or other tools
$graph The full graph of all dependencies among traits
$con.comp A list of the group membership etc. produced by 'igraph::components'
$traits The old trait names that were amalgamated
$new.traits The new names of the amalgamated trait names
$depstates A list providing the dependencies of all characters
phenoscape/scate-shortcourse documentation built on Feb. 5, 2023, 12:59 a.m.
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View source: R/auto_functions.R
| amalgamate_deps | R Documentation |
Generates a graph and model for traits given a dependency matrix
Description
Generates a graph and model for traits given a dependency matrix
Usage
amalgamate_deps(dep_mat)
Arguments
dep_mat |
A dependency matrix |
Details
The dependency matrix can come from 'rphenoscape::pa_dep_matrix' or be user generated
Value
A list of: $M Transition matrices for the Structured-Hidden State Markov Models that can be run in RevBayes, corHMM or other tools $graph The full graph of all dependencies among traits $con.comp A list of the group membership etc. produced by 'igraph::components' $traits The old trait names that were amalgamated $new.traits The new names of the amalgamated trait names $depstates A list providing the dependencies of all characters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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