read.alignment.file: Read a fasta-formatted alignment file
In phraber/lassie: Tools to select sites and sequences that represent variation in a longitudinally sampled protein alignment
Description
Usage
Arguments
Value
Examples
Description
Read a fasta-formatted alignment file
Usage
1
read.alignment.file(aas_file = NULL, alignment_format = "fasta")
Arguments
aas_file
File containing aligned protein sequences
alignment_format
Format of alignment file/s; must be one of these: fasta, clustal, phylip, msf, or mase.
Value
A matrix that contains the alignment.
Examples
1
2
3
4
5
## Not run:
aln <- read.alignment.file(system.file("extdata", "CH505-gp160.fasta",
package="lassie"))
## End(Not run)
phraber/lassie documentation built on May 25, 2019, 6:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Read a fasta-formatted alignment file
Usage
1 | read.alignment.file(aas_file = NULL, alignment_format = "fasta")
|
Arguments
aas_file |
File containing aligned protein sequences |
alignment_format |
Format of alignment file/s; must be one of these: |
Value
A matrix that contains the alignment.
Examples
1 2 3 4 5 | ## Not run:
aln <- read.alignment.file(system.file("extdata", "CH505-gp160.fasta",
package="lassie"))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.