simdata: Simulated data for lichens and plants

In phytomosaic/foggy: Species and Trait Responses to Fog Gradients

Description

This data set gives information about species, environment, traits, and phylogeny for simulated replicate communities of lichens and plants.

Usage

simdata

Format

A list of lists each containing:
- spe 33 observations of 50 species,
- env 33 observations of 2 enviro variables,
- tra 3 traits for 50 species,
- phy phylogeny for 50 species.

Details

Simulated with R package ecolottery per Munoz et al. (2018).

References

Munoz, F., M. Grenié, P. Denelle, A. Taudière, F. Laroche, C. Tucker, and C. Violle. 2018. ecolottery: Simulating and assessing community assembly with environmental filtering and neutral dynamics in R. Methods in Ecology and Evolution 9:693–703.

Examples

data(simdata)
x <- simdata[[1]]
plot_heatmap(x$spe, xord=FALSE)
plot_heatmap(x$env, xord=FALSE)
plot_heatmap(x$tra, xord=FALSE)
plot(x$phy, cex=0.7)

phytomosaic/foggy documentation built on Nov. 5, 2019, 12:20 a.m.