Man pages for picardis/nestR
Estimation of Bird Nesting from Tracking Data
| attempt_limits | Determine start and end dates of nesting attempt |
| candidate_summary | Summarize number of points within candidate buffers |
| check_input | Check input data format |
| choose_overlapping | Handle overlapping attempts |
| compare_buffers | Perform sensitivity analysis of buffer size for nest... |
| date_handler | Process dates and subset data within nesting season |
| discriminate_nests | Find set/s of parameter values to discriminate nests |
| dist_mat | Calculate distance matrix between points in the data |
| estimate_outcomes | Estimate nesting outcomes |
| explore_nests | Launch Shiny app for nesting data exploration |
| find_nests | Find nest locations from GPS data |
| format_attempts | Format data for nesting outcome estimation |
| get_candidates | Get top candidate nests from possible competitors |
| get_candidates_multi | Get top candidate nests from possible competitors (multiple... |
| get_explodata | Extract nests and non-nests from revisited locations |
| initialize_z | Set initial known-state values prior to JAGS MCMC |
| nestR | nestR: A package Analysis of movement recursions to detect... |
| nestR-package | nestR: Estimation of Bird Nesting from Tracking Data |
| perf_metrics | Compute nest-detection performance metrics |
| pipe | Pipe operator |
| plot_detection | Plot detection probability over time from MCMC run |
| plot_nest_surv | Plot nest survival over time from MCMC run |
| plot_survival | Plot survival over time from MCMC run |
| revisit_stats | Calculate revisitation patterns |
| rle_to_consec | Calculate consecutive days visited |
| summarize_outcomes | Summary of outcomes from MCMC run |
| visit_rle | Run-length encoding of nest visits |
