Files in pieterbeck/CanHeMonR
Tools for canopy health monitoring through image analysis
.Rbuildignore
.Rhistory
.gitignore
CanHeMonR.Rproj
DESCRIPTION
NAMESPACE
R/PWN_functions.R
R/PWN_plotting_functions.R
R/assign_crowncells_quantile.r
R/assign_crowncells_quantile_parallel.r
R/balanced_sampling.R
R/calculate_TerraBella_indices.r
R/calibrate_sicktree_model.r
R/calibrate_sicktree_model_multi_tile.r
R/classify_maxent_output_based_on_errors_stats.r
R/create_overview_of_rasters.r
R/crown_indices_from_bigshape.r
R/crown_inspector.R
R/evaluate_crown_growing_efficiency.r
R/fit_function_to_canopy_health_index.r
R/get_TerraBella_scene_date.R
R/merge_pnt_shp_files_by_attributes.r
R/package_test_fun.r
R/polygons_to_seeds.r
R/region_growing_functions.r
R/region_growing_wrapper.r
R/remoteness_functions.R
R/remove_small_pols.r
R/run_sicktree_model.r
R/run_sicktree_model_multi_tile.r
R/run_sicktree_model_multi_tile_BDEOSS.r
R/sample_false_positives.r
R/sample_for_sicktree_model_multi_tile.r
R/segment_classification_functions.R
R/shadow_based_seed_filter.R
R/shift_polygons_to_points.r
R/shp_copy.r
R/sick_tree_errors.R
R/spectral_indices.r
R/spectral_indices_for_crowns.r
R/tps2d_seeds.r
R/watershed_tree_delineation.r
README.Rmd
man/ADS100_G2R.Rd
man/ADS100_NDVI.Rd
man/BGI1.Rd
man/BGI2.Rd
man/BRI1.Rd
man/BRI2.Rd
man/Blue_index.Rd
man/CI.Rd
man/CRI550.Rd
man/CRI700.Rd
man/CTRI1.Rd
man/CTRI2.Rd
man/CUR.Rd
man/DMC_G2R.Rd
man/DMC_NDVI.Rd
man/EVI.Rd
man/GM1.Rd
man/GM2.Rd
man/Greenness.Rd
man/LIC1.Rd
man/LIC2.Rd
man/LIC3.Rd
man/MCARI1.Rd
man/MCARI2.Rd
man/MSAVI.Rd
man/MTVI1.Rd
man/MTVI2.Rd
man/NDVI.Rd
man/NPCI.Rd
man/NPQI.Rd
man/OSAVI.Rd
man/PRI512.Rd
man/PRI515.Rd
man/PRI570.Rd
man/PRI600.Rd
man/PRI670.Rd
man/PRI670_570.Rd
man/PRI_CI.Rd
man/PRIn.Rd
man/PSNDc.Rd
man/PSRI.Rd
man/PSSRa.Rd
man/PSSRb.Rd
man/PSSRc.Rd
man/RARS.Rd
man/RDVI.Rd
man/RNIR_CRI550.Rd
man/RNIR_CRI700.Rd
man/Redness.Rd
man/SIPI.Rd
man/SR.Rd
man/SRPI.Rd
man/TCARI.Rd
man/TCARI_over_OSAVI.Rd
man/TVI.Rd
man/VOG1.Rd
man/VOG2.Rd
man/VOG3.Rd
man/add_PT_buffer_parishes_borders.Rd
man/assign_crowncells_quantile.Rd
man/assign_crowncells_quantile_parallel.Rd
man/calc_neighbours_pix_nrs.Rd
man/calculate_TerraBella_indices.Rd
man/calculate_remoteness_from_binary_raster.Rd
man/calibrate_sicktree_model.Rd
man/calibrate_sicktree_model_multi_tile.Rd
man/check_im_res.Rd
man/classify_maxent_output_based_on_error_stats.Rd
man/clip_polygons2rasters.Rd
man/close_crown.Rd
man/create_overview_of_rasters.Rd
man/crown_indices_from_bigshape.Rd
man/crown_inspector.Rd
man/datt_CabCx_c.Rd
man/datt_NIRCabCx_c.Rd
man/eliminate_split_crown.Rd
man/ensure_uneven_r_dim.Rd
man/evaluate_crown_growing_efficiency.Rd
man/extract_mn_sd.Rd
man/fit_simple_polynomial.Rd
man/flag_valid_pix.Rd
man/get_TerraBella_scene_date.Rd
man/get_band_of_wavelength.Rd
man/get_index_or_wavelength_from_brick.Rd
man/grow_crown.Rd
man/grow_crowns.Rd
man/histnd.Rd
man/identify_n_neighbours.Rd
man/indiv_bands.Rd
man/mask_to_PT_buffer_zone.Rd
man/merge_pnt_shp_files_by_attributes.Rd
man/merge_pols_intersected_by_lines.Rd
man/mod_SR.Rd
man/pairsplot.Rd
man/point_at_highest_value_in_polygon.Rd
man/polygons_to_seeds.Rd
man/proximity_indices.Rd
man/rF_predictions_to_polygons.Rd
man/remove_all_NA.Rd
man/remove_holes.Rd
man/remove_small_pols.Rd
man/run_sicktree_model.Rd
man/run_sicktree_model_multitile.Rd
man/samp_df.Rd
man/sample_false_positives.Rd
man/sample_for_sicktree_model_multi_tile.Rd
man/samplestratified.Rd
man/samplestratified_shp.Rd
man/shadow_based_seed_filter.Rd
man/shift_polygons_to_points.Rd
man/shp_copy.Rd
man/sick_tree_errors.Rd
man/spectral_indices_for_crowns.Rd
man/subtract_control_median.Rd
man/test_fun.Rd
man/tile_raster_extent.Rd
man/tps2d_seeds.Rd
man/train_rF_classifier_on_polygons.Rd
man/watershed_tree_detection.Rd
