Man pages for pjnewcombe/R2BGLiMS
R interface to the java package BGLiMS (Bayesian Generalised Linear Model Selection).
| AutocorrelationPlot | Autocorrelation plot for model selection. Model inclusion of... |
| CredibleSet | Infer credible sets of predictors |
| dot-ApproxPostProbsByModelEnumeration | Enumertated approximate posterior probabilities |
| dot-BayesFactor | Calculates a Bayes Facotor, give a prior and posterior... |
| dot-BetaBinomialProbabilitySpecificModel | Calculates a Beta-Binomial prior probability for a SPECIFIC... |
| dot-ConfounderAdjustedResiduals | Replaces the outcome variable with residuals from a linear... |
| dot-ModelSpaceProbs | Calculates prior probababilities for x, and >=x causal... |
| dot-ModelSpaceSpecProb | Calculates prior probabability of causality for a particular... |
| dot-ReadData | Read formatted data file |
| dot-ReweightSnpEffectsAccordingToBlockCorrelations | This function is used by... |
| dot-WriteData | Write Java MCMC format data file |
| GetBetaBinomMuSd | Derives the beta-binomial mean and standard deviation |
| GetBetaBinomParams | Derives the beta-binomial parameters for target mean and... |
| JAM | JAM (Joint Analysis of Marginal statistics) |
| JAM_LogisticToLinearEffects | Logistic to linear effect conversion for JAM |
| JAMMR | JAMMR - Bayesian variable selection for Mendelian... |
| JAMMR_ManhattanPlot | JAMMR_ManhattanPlot |
| JAMMR_SensitivityPlot | JAMMR_SensitivityPlot |
| JAM_PointEstimates | JAM (Joint Analysis of Marginal statistics) multivariate... |
| JAMPred | JAMPred |
| JAMPred_ParallelBlockIndices | List of which LD blocks are to be analysed on which CPU core |
| JAMPred_SplitIntoPositiveDefiniteBlocks | Splits a list of SNPs into positive definite blocks. |
| JAM_RankCheck | JAM rank check. |
| ManhattanPlot | Manhattan Plot |
| ModelSizeBayesFactors | Infer credible sets of predictors |
| NormInvGamPosteriorSample | Generate conjugate posterior sample of coefficients for a... |
| PrettyResultsTable | A pretty summary results table for reports. NOTE: This... |
| R2BGLiMS | Call BGLiMS from R |
| R2BGLiMS-package | R interface to the java package "BGLiMS" (Bayesian... |
| R2BGLiMS_Results-class | The R2BGLiMS_Results class |
| R2BGLiMS_Results-methods | 'show' method for 'R2BGLiMS_Results-class' objects |
| StrongestPairwiseCorrelation | Strongest Pairwise Correlation |
| TopModels | Table of top models |
| TracePlots | Parameter posterior trace plots for a R2BGLiMS results object |
