TracePlots: Parameter posterior trace plots for a R2BGLiMS results object

In pjnewcombe/R2BGLiMS: R interface to the java package BGLiMS (Bayesian Generalised Linear Model Selection).

Description

Generates posterior trace plots for a R2BGLiMS results object

Usage

TracePlots(
  results,
  vars.to.include = NULL,
  var.dictionary = NULL,
  predictors.only = FALSE,
  file = NULL,
  add.to.title = NULL,
  par.mfrow = NULL,
  add.panel.labels = FALSE
)

Arguments

results	A R2BGLiMS_Results-class object frum running the R2BGLiMS command.
var.dictionary	Character vector containing a mapping of covariate names to substitutions for the plot. The names of the elements are the variable names as in the original analysis (i.e. as named in the results object).
predictors.only	If true only chain plots for predictors are plotted (and intercept, likelihood etc. are excluded). Default is FALSE.
file	PDF path
add.to.title	Optional character string to add to the start of each plot title
par.mfrow	Allow passing the mfrow layout vector to par. Default par(mfrow=c(5,2))
add.panel.labels	Add lower case letter labels to panel titles. Default FALSE. Note: Does not work when providing a var.dictionary

Value

NA

Author(s)

Paul Newcombe

Examples

library(R2BGLiMS)

### --- Logistic regression with two model space prior components
# Load results from the biopsy logistic regression analysis (see R2MHRJ examples)
data(biopsyResults)
TracePlots(biopsyResults)

pjnewcombe/R2BGLiMS documentation built on Feb. 10, 2020, 8:52 p.m.