add.array.values | Add an array to values |
add.colours.contours | Add color definitions to contours |
add.field | Add field ID column to beams |
add.vois | Combine 2 existing VOIS object into one |
a.from.ion | A from Ion |
alpha.beta.ion.range | Evaluation of ion alpha and beta LQ parameters |
alpha.beta.ion.sequence | Evaluation of ion alpha and beta LQ parameters |
alpha.beta.lqp | Evaluation of Linear-Quadratic (LQ) Poisson Model parameters |
alpha.beta.mkm | Evaluation of alpha and beta LQ parameter (fast MKM) |
alpha.fun.mkm | Evaluate alpha function (MKM) |
available.beamlines | Available beamlines (PlanKIT) |
available.constraint.types | Available constraints (Pure-dek) |
available.variables | Available variables (Pure-dek) |
available.variables.gate | Available variables (Gate) |
beta.c | Evaluate beta (velocity/c) |
check.gate | Check the configuration of Gate |
check.plankit | Check the configuration of PlanKIT |
check.prescription | Check the prescription |
colormap.ct | Generate gray colormap for Hounsfield numbers |
combine.beamLUTs | Combine beamLUTs |
combine.values | Combine values |
convert.fluence2mu | converte fluenze in beams da numero di particelle a MU |
convert.mu2fluence | converte fluenze in beams da MU a numero di particelle |
create.beam | Create an empty beam(s) object |
create.constraint | Crea oggetto prescrizione (dataframe) |
create.field | Create a field object (dataframe) |
create.gate.structure | Create Gate structure |
create.intervals | Generate bin intervals from points |
create.noise.ct | noise sulla CT |
create.plan | Generate Plan template (Pure-dek) |
create.plan.gate | Generate Plan template (Gate) |
create.values | Create values object |
create.vois | Create a VOIS object from a contours object |
create.vois.from.logical.array | Create a VOIS object from a logical array |
create.waterbox.gate | Create a water box object (Gate) |
dataframe.from.values | Generate data.frame from values object |
demo.puredek | Evaluate a test planning |
display.all.plan | procedura per creare un display complessivo da un "plan" |
display.beamports | Beam-port splot |
display.beams | Beam statistics plot |
display.contours.legend | Add a legend with contours names/colours. |
display.dvh | Display DVHs |
display.dvh2d | plot di "dvh2D per un voi e due variabili specifiche |
display.dvh2d.multiple | plot multiplo di dvh2D |
display.dvh.bands | Visualizza una banda sul DVH |
display.dvh.bands.multiple | Visualizza una banda sui DVH |
display.dvh.combined | Display DVHs |
display.lut | 2D display of the beam-lut |
display.profile | Display profile |
display.profiles | Display profiles |
display.rays | Display rays (3D) |
display.slice | Display a 2D slice |
display.slice.all | Display a 2D slice superimposed to the CT |
display.slice.ct | Display CT slices |
display.slices.interactive | mostra slice in maniera interattiva |
display.spots | Display spots (3D) |
dumpslices.3d.2.png | fa un dump del file .3d in una serie di immagini png... |
dvh.evaluate | Evaluate DVH |
dvh.evaluate.all | calcola DVH per tutti i VOI |
dvh.evaluate.bands | Evaluate DVH confidence band |
embed.data | Embed data into plan |
evaluate.bands | Evaluate percentile band |
evaluate.epl | Evaluate the equivalent path length |
file.variable.gate | Map the variable name to file name (Gate) |
generate.contours | Generate the contours |
generate.ct | Generate a CT phantom |
generate.ct.contours | Generate a complete phantom (CT + contours) |
generate.materials.gate | Generate Materials (Gate) |
generate.report | Generate report |
generate.values.from.events | Create values form events |
get.alpha.beta.beamLUT | Evaluate net alpha and beta from beamLUTs (pure-dek) |
get.array.values | estrai array della variabile specificata dai values |
get.bdose.beamLUT | Evaluate equivalent dose from beamLUTs (pure-dek) |
get.beamLUTs | Get beamLUTs |
get.beams | Get beams from plan |
get.contours | Get contours from plan |
get.coordinates | Get coordinates from voxel index |
get.ct | Get ct object from plan object |
get.ct.entrance.point | Get entrance point in CT |
get.dektools.env | Get Environment Variables |
get.dose.beamLUT | Evaluate net Dose from beamLUTs (pure-dek) |
get.filepath | Filepath of objects |
get.install.path | Get installing folder |
get.isocenter | recupera isocentro |
get.letd.beamLUT | Evaluate net dose averaged LET from beamLUTs (pure-dek) |
get.origin | Get origin coordinates |
get.prescription | recupera prescrizione |
get.profile | Get profile |
get.profiles | Get profiles |
get.rays | Get rays from beams |
get.rbe.beamLUT | Evaluate net RBE from beamLUTs (pure-dek) |
get.sparse.array.gate | Get sparse array values (Gate) |
get.subset.values | Get a subset of a 'values' object. |
get.subset.vois | Get a subset of a 'vois' object. |
get.values | Get values object |
get.values_at.points | get values at coordinates |
get.values.dataframe | recupera matrice di valori in formato dataframe |
get.values.for.beam | Evaluate BeamLUT (obsolete) |
get.values.gate | Get values object (Gate) |
get.values.gate.plan | Get values object (Gate) |
get.values.list | Get values objects |
get.values.plankit.plan | Get values object (PlanKIT) |
get.voiindex | Get the VOI index from the contours file |
get.voi.logical | Evaluate VOI logical matrix |
get.vois | Get VOIs from plan |
get.voxel.index | Get voxel index from coordinates |
get.zBP.fun | Return a function z.BP(E) |
header2list | Convert DICOM header file/data.frame to nested list |
identify.slice | identifica slice corrispondente alla coordinata |
install.gate | Install Gate |
install.plankit | Install Plankit (obsolete) |
install.puredek | Install Pure-dek |
install.survival | Install Survival |
interpolate.values | Tri-linear interpolation |
ion.from.z | Ion from Z |
is.in.voi | Check if point(s) is(are) inside a VOI |
load.test.data | carica dati per i test |
lut.add.alpha | Add alpha values to lUT |
lut.add.beta | aggiungi beta alla lut |
lut.add.rbe.alpha | Aggiunge RBE.alpha alla LUT |
lut.radial.integral | integra la lut radiale |
merge.values | Merge a list of values |
meshgrid | Create a meshgrid |
mkm.lower | MKM lower limits |
mkm.upper | MKM upper limits |
my.ggplot.theme | imposta stile generale per ggplot2 |
NTCP.cMKM | calcola NTCP con modello cMKM |
ntcp.kallman | NTCP (Biological Dose, Relative Seriality Model... |
ntcp.kallman.train | NTCP (Biological Dose, Relative Seriality Model... |
NTCP.LL.cMKM | calcola la log likelihood di complicazioni (NTCP), per un... |
NTCP.LL.LM | calcola la log likelihood di complicazioni (NTCP), per un... |
NTCP.LM | calcola NTCP con modello LM |
ntcp.S | NTCP (Relative Seriality Model [Kallman1992a]) |
P | funzione spettro di potenza |
points2intervals | Evaluate intervals |
ray.tracing | Ray-tracing (intersections) |
rbe.evaluate | Evaluation of dose-depending RBE |
read.1d | Read 1D array |
read.3d | Read 3d array (PlanKIT) |
read.3d.dicom | Read 3d DICOM |
read.3d.hdr | Read 3d array (Analyze/Gate) |
read.beamLUT | Read a beamLUT (pure-dek) |
read.beamLUTs | Read the beamLUTs (pure-dek) |
read.beams | Read beams from file (PlanKIT) |
read.contours | Read contours from file |
read.contours.dicom | Read contours from DICOM file |
read.lut | Read LUT (4d) |
read.materials.gate | Read materials database (Gate) |
read.plan | Read Plan |
read.vois | Read VOIs from file |
remove.atomic.mass | Remove atomic mass number |
remove.values.outside.voi | Removes values outside VOI |
render.isosurfaces | rendering di isosuperfici da matrice values (openGL) |
render.isosurfaces.static | rendering di isosuperfici da matrice values |
render.voi.isosurfaces | rendering 3D dei voi con isosuperfici |
rest.energy | Rest energy |
Rplanit-package | RT Ion planning simulations and analysis |
run.dek.forward | Forward planning (Pure-dek) |
run.dek.inverse | Inverse planning (Pure-dek) |
run.gate.forward | Evaluate forward planning (Gate) |
sanitize.contours | Correct consistency of contours |
sanitize.ct | rimuove valori fuori range della ct |
sanitize.filename | Sanitize file name |
sanitize.values | Set not defined or not "physical" values to NA |
save.plan | Save Plan |
set.ct.gate | Set the CT/phantom (Gate) |
set.dektools.env | Set Environment Variables |
setenv.rplanit | Set the system environment variables |
set.lut.folder | Set LUT folder |
set.origin | Set origin coordinates |
set.wepl.folder | Set WEPL folder |
sparse.array.from.values | get sparse format data from a values object |
srim.es.max | srim.limits |
srim.es.min | srim.limits |
srim.let.max | srim.limits |
srim.let.min | srim.limits |
TCP.cMKM | calcola TCP con modello cMKM |
TCP.LL.cMKM | calcola la log likelihood di cura (TCP), per un singolo caso,... |
TCP.LL.LM | calcola la log likelihood di cura (TCP), per un singolo caso,... |
TCP.LM | calcola TCP con modello LM |
tcp.lqp | TCP (Poissonian Model, Biological Dose) |
tcp.lqp.train | TCP (Biological Dose, Poissonian Model, Variable fractions) |
tcp.S | TCP (Poissonian Model) |
threshold.values | Set values under threshold to NA |
values.add.RBE | calcola l'RBE e l'agiunge in values a partire da alpha e beta... |
values.add.RBE.alpha | Calcola l'RBE.alpha e l'aggiunge in values |
values.add.survival.cMKM | Calcola la sopravvivenza secondo il modello cMKM e la... |
values.add.survival.LM | Calcola la sopravvivenza secondo il modello LM e la aggiunge... |
values.app | Values eploration (Web App) |
values.from.sparse.array | Create values from sparse array |
volume.contours | Evaluate volume from contours |
write.3d | Write 3D array (Pure-dek) |
write.analyze | Write 3D array (analyze) |
write.beamLUT | scrive le matrici V_b,v (beamLUT) (obsolete) |
write.beams | Write beams (RTIonPlan) |
write.contours | Save contours |
write.lut | salva la lut a partire dai dati in memoria |
write.lut.4d | Write LUT 4d data array |
write.lut.meta | Write LUT meta file |
write.lut.optics | Write LUT optics (meta) file |
write.lut.phasespace | Write LUT phase-space file |
write.lut.zBP | Write LUT Bragg peaks depths file |
Zeff | Evaluate the effective charge |
z.from.ion | Z from ion |
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