Files in planit-group/Rplanit
Radiotherapy with ion beams - planning, simulations and analysis
.Rbuildignore
.gitignore
DESCRIPTION
Gate-data/tps.template/data/GateMaterials.db
Gate-data/tps.template/data/MyMaterials.db
Gate-data/tps.template/data/MyMaterials2010.db
Gate-data/tps.template/data/Schneider2000DensitiesTable.txt
Gate-data/tps.template/data/Schneider2000MaterialsTable.txt
Gate-data/tps.template/data/ct-HU2mat.txt
Gate-data/tps.template/data/ct-HUmaterials.db
Gate-data/tps.template/data/protonCnao.txt
Gate-data/tps.template/data/protonSimple.txt
Gate-data/tps.template/mac/Parameters-list-2010.mac
Gate-data/tps.template/mac/Physics-list-2010.mac
Gate-data/tps.template/mac/Physics-list-2011.mac
Gate-data/tps.template/mac/Voxel_Patient.mac
Gate-data/tps.template/mac/main.mac
Gate-data/tps.template/mac/physicslist.mac
Gate-data/tps.template/mac/physicslist_EM_std.mac
Gate-data/tps.template/mac/physicslist_HAD_std.mac
Gate-data/tps.template/mac/verbose.mac
Gate-data/tps.template/mac/visu.mac
Gate-data/tps.template/output/.delete-me
Gate-data/tps.template/run-gate.sh
LICENSE
NAMESPACE
R/apps-functions.R
R/beams-functions.R
R/biological-functions.R
R/ct-functions.R
R/display-functions.R
R/dvh-functions.R
R/environment-functions.R
R/gate-functions.R
R/lut-functions.R
R/noise-functions.R
R/particles.R
R/phantom-functions.R
R/plankit-functions.R
R/prescription-functions.R
R/reading-writing-functions.R
R/reporting-functions.R
R/testing-functions.R
R/values-functions.R
R/vois-functions.R
README.md
Rplanit.Rproj
load-package.R
man/NTCP.LL.LM.Rd
man/NTCP.LL.cMKM.Rd
man/NTCP.LM.Rd
man/NTCP.cMKM.Rd
man/P.Rd
man/Rplanit-package.Rd
man/TCP.LL.LM.Rd
man/TCP.LL.cMKM.Rd
man/TCP.LM.Rd
man/TCP.cMKM.Rd
man/Zeff.Rd
man/a.from.ion.Rd
man/add.array.values.Rd
man/add.colours.contours.Rd
man/add.field.Rd
man/add.vois.Rd
man/alpha.beta.ion.range.Rd
man/alpha.beta.ion.sequence.Rd
man/alpha.beta.lqp.Rd
man/alpha.beta.mkm.Rd
man/alpha.fun.mkm.Rd
man/available.beamlines.Rd
man/available.constraint.types.Rd
man/available.variables.Rd
man/available.variables.gate.Rd
man/beta.c.Rd
man/check.gate.Rd
man/check.plankit.Rd
man/check.prescription.Rd
man/colormap.ct.Rd
man/combine.beamLUTs.Rd
man/combine.values.Rd
man/convert.fluence2mu.Rd
man/convert.mu2fluence.Rd
man/create.beam.Rd
man/create.constraint.Rd
man/create.field.Rd
man/create.gate.structure.Rd
man/create.intervals.Rd
man/create.noise.ct.Rd
man/create.plan.Rd
man/create.plan.gate.Rd
man/create.values.Rd
man/create.vois.Rd
man/create.vois.from.logical.array.Rd
man/create.waterbox.gate.Rd
man/dataframe.from.values.Rd
man/demo.puredek.Rd
man/display.all.plan.Rd
man/display.beamports.Rd
man/display.beams.Rd
man/display.contours.legend.Rd
man/display.dvh.Rd
man/display.dvh.bands.Rd
man/display.dvh.bands.multiple.Rd
man/display.dvh.combined.Rd
man/display.dvh2d.Rd
man/display.dvh2d.multiple.Rd
man/display.lut.Rd
man/display.profile.Rd
man/display.profiles.Rd
man/display.rays.Rd
man/display.slice.Rd
man/display.slice.all.Rd
man/display.slice.ct.Rd
man/display.slices.interactive.Rd
man/display.spots.Rd
man/dumpslices.3d.2.png.Rd
man/dvh.evaluate.Rd
man/dvh.evaluate.all.Rd
man/dvh.evaluate.bands.Rd
man/embed.data.Rd
man/evaluate.bands.Rd
man/evaluate.epl.Rd
man/file.variable.gate.Rd
man/generate.contours.Rd
man/generate.ct.Rd
man/generate.ct.contours.Rd
man/generate.materials.gate.Rd
man/generate.report.Rd
man/generate.values.from.events.Rd
man/get.alpha.beta.beamLUT.Rd
man/get.array.values.Rd
man/get.bdose.beamLUT.Rd
man/get.beamLUTs.Rd
man/get.beams.Rd
man/get.contours.Rd
man/get.coordinates.Rd
man/get.ct.Rd
man/get.ct.entrance.point.Rd
man/get.dektools.env.Rd
man/get.dose.beamLUT.Rd
man/get.filepath.Rd
man/get.install.path.Rd
man/get.isocenter.Rd
man/get.letd.beamLUT.Rd
man/get.origin.Rd
man/get.prescription.Rd
man/get.profile.Rd
man/get.profiles.Rd
man/get.rays.Rd
man/get.rbe.beamLUT.Rd
man/get.sparse.array.gate.Rd
man/get.subset.values.Rd
man/get.subset.vois.Rd
man/get.values.Rd
man/get.values.dataframe.Rd
man/get.values.for.beam.Rd
man/get.values.gate.Rd
man/get.values.gate.plan.Rd
man/get.values.list.Rd
man/get.values.plankit.plan.Rd
man/get.values_at.points.Rd
man/get.voi.logical.Rd
man/get.voiindex.Rd
man/get.vois.Rd
man/get.voxel.index.Rd
man/get.zBP.fun.Rd
man/header2list.Rd
man/identify.slice.Rd
man/install.gate.Rd
man/install.plankit.Rd
man/install.puredek.Rd
man/install.survival.Rd
man/interpolate.values.Rd
man/ion.from.z.Rd
man/is.in.voi.Rd
man/load.test.data.Rd
man/lut.add.alpha.Rd
man/lut.add.beta.Rd
man/lut.add.rbe.alpha.Rd
man/lut.radial.integral.Rd
man/merge.values.Rd
man/meshgrid.Rd
man/mkm.lower.Rd
man/mkm.upper.Rd
man/my.ggplot.theme.Rd
man/ntcp.S.Rd
man/ntcp.kallman.Rd
man/ntcp.kallman.train.Rd
man/points2intervals.Rd
man/ray.tracing.Rd
man/rbe.evaluate.Rd
man/read.1d.Rd
man/read.3d.Rd
man/read.3d.dicom.Rd
man/read.3d.hdr.Rd
man/read.beamLUT.Rd
man/read.beamLUTs.Rd
man/read.beams.Rd
man/read.contours.Rd
man/read.contours.dicom.Rd
man/read.lut.Rd
man/read.materials.gate.Rd
man/read.plan.Rd
man/read.vois.Rd
man/remove.atomic.mass.Rd
man/remove.values.outside.voi.Rd
man/render.isosurfaces.Rd
man/render.isosurfaces.static.Rd
man/render.voi.isosurfaces.Rd
man/rest.energy.Rd
man/run.dek.forward.Rd
man/run.dek.inverse.Rd
man/run.gate.forward.Rd
man/sanitize.contours.Rd
man/sanitize.ct.Rd
man/sanitize.filename.Rd
man/sanitize.values.Rd
man/save.plan.Rd
man/set.ct.gate.Rd
man/set.dektools.env.Rd
man/set.lut.folder.Rd
man/set.origin.Rd
man/set.wepl.folder.Rd
man/setenv.rplanit.Rd
man/sparse.array.from.values.Rd
man/srim.es.max.Rd
man/srim.es.min.Rd
man/srim.let.max.Rd
man/srim.let.min.Rd
man/tcp.S.Rd
man/tcp.lqp.Rd
man/tcp.lqp.train.Rd
man/threshold.values.Rd
man/values.add.RBE.Rd
man/values.add.RBE.alpha.Rd
man/values.add.survival.LM.Rd
man/values.add.survival.cMKM.Rd
man/values.app.Rd
man/values.from.sparse.array.Rd
man/volume.contours.Rd
man/write.3d.Rd
man/write.analyze.Rd
man/write.beamLUT.Rd
man/write.beams.Rd
man/write.contours.Rd
man/write.lut.4d.Rd
man/write.lut.Rd
man/write.lut.meta.Rd
man/write.lut.optics.Rd
man/write.lut.phasespace.Rd
man/write.lut.zBP.Rd
man/z.from.ion.Rd
