API for plger/scDblFinder
scDblFinder
| Global functions | |
|---|---|
| .FDR | Source code |
| .FNR | Source code |
| .FPR | Source code |
| .aggResultsTable | Source code |
| .atacProcessing | Source code |
| .castorigins | Source code |
| .checkColArg | Source code |
| .checkProcArg | Source code |
| .checkPropArg | Source code |
| .checkSCE | Source code |
| .clamulet.buildTable | Source code |
| .clustSpearman | Source code |
| .clusterFeaturesStep | Source code |
| .compareToExpectedDoublets | Source code |
| .defTrainFeatures | Source code |
| .defaultKnnKs | Source code |
| .defaultProcessing | Source code |
| .doublet_cells | Source code |
| .doublet_cluster | Source code |
| .doublet_recovery | Source code |
| .estimateHeterotypicDbRate | Source code |
| .evaluateKNN | Source code |
| .filterUnrecognizableDoublets | Source code |
| .gdbr | Source code |
| .getCovCounts | Source code |
| .getDR | Source code |
| .getDoubletStats | Source code |
| .getMetaCells | Source code |
| .getMetaGraph | Source code |
| .getMostLikelyOrigins | Source code |
| .getOvsFromCovs | Source code |
| .getThetaDist | Source code |
| .import.bed | Source code |
| .knnSmooth | Source code |
| .optimThreshold | Source code |
| .prepSCE | Source code |
| .prop.dev | Source code |
| .removeHighOverlapSites | Source code |
| .rescaleSampleScores | Source code |
| .scDblAddCD | Source code |
| .scDblscore | Source code |
| .sliceGR | Source code |
| .spawn_doublet_pcs | Source code |
| .sumRleLists | Source code |
| .tablevec | Source code |
| .xgbtrain | Source code |
| TFIDF | Man page Source code |
| addDoublets | Man page Source code |
| aggregateFeatures | Man page Source code |
| amulet | Man page Source code |
| amuletFromCounts | Man page Source code |
| clamulet | Man page Source code |
| clusterStickiness | Man page Source code |
| computeDoubletDensity | Man page |
| computeDoubletDensity,ANY-method | Man page |
| computeDoubletDensity,SingleCellExperiment-method | Man page |
| computeDoubletDensity,SummarizedExperiment-method | Man page |
| createDoublets | Man page Source code |
| cxds2 | Man page Source code |
| directDblClassification | Man page Source code |
| doubletPairwiseEnrichment | Man page Source code |
| doubletThresholding | Man page Source code |
| fastcluster | Man page Source code |
| findDoubletClusters | Man page |
| findDoubletClusters,ANY-method | Man page |
| findDoubletClusters,SingleCellExperiment-method | Man page |
| findDoubletClusters,SummarizedExperiment-method | Man page |
| getArtificialDoublets | Man page Source code |
| getCellPairs | Man page Source code |
| getExpectedDoublets | Man page Source code |
| getFragmentOverlaps | Man page Source code |
| mockDoubletSCE | Man page Source code |
| plotDoubletMap | Man page Source code |
| plotThresholds | Man page Source code |
| propHomotypic | Man page Source code |
| recoverDoublets | Man page |
| recoverDoublets,ANY-method | Man page |
| recoverDoublets,SingleCellExperiment-method | Man page |
| recoverDoublets,SummarizedExperiment-method | Man page |
| scDblFinder | Man page Source code |
| selFeatures | Man page Source code |
