getCellPairs: getCellPairs

In plger/scDblFinder: scDblFinder

getCellPairs

Description

Given a vector of cluster labels, returns pairs of cross-cluster cells

Usage

getCellPairs(
  clusters,
  n = 1000,
  ls = NULL,
  q = c(0.1, 0.9),
  selMode = "proportional",
  soft.min = 5
)

Arguments

clusters	A vector of cluster labels for each cell, or a list containing metacells and graph
n	The number of cell pairs to obtain
ls	Optional library sizes
q	Library size quantiles between which to include cells (ignored if 'ls' is NULL)
selMode	How to decide the number of pairs of each kind to produce. Either 'proportional' (default, proportional to the abundance of the underlying clusters), 'uniform' or 'sqrt'.
soft.min	Minimum number of pairs of a given type.

Value

A data.frame with the columns

Examples

# create random labels
x <- sample(head(LETTERS), 100, replace=TRUE)
getCellPairs(x, n=6)

plger/scDblFinder documentation built on June 19, 2024, 3:34 p.m.