plotDoubletMap: plotDoubletMap

In plger/scDblFinder: scDblFinder

plotDoubletMap

Description

Plots a heatmap of observed versus expected doublets. Requires the 'ComplexHeatmap' package.

Usage

plotDoubletMap(
  sce,
  colorBy = "enrichment",
  labelBy = "observed",
  addSizes = TRUE,
  col = NULL,
  column_title = "Clusters",
  row_title = "Clusters",
  column_title_side = "bottom",
  na_col = "white",
  ...
)

Arguments

sce	A SingleCellExperiment object on which 'scDblFinder' has been run with the cluster-based approach.
colorBy	Determines the color mapping. Either "enrichment" (for log2-enrichment over expectation) or any column of 'metadata(sce)$scDblFinder.stats'
labelBy	Determines the cell labels. Either "enrichment" (for log2-enrichment over expectation) or any column of 'metadata(sce)$scDblFinder.stats'
addSizes	Logical; whether to add the sizes of clusters to labels
col	The colors scale to use (passed to 'ComplexHeatmap::Heatmap')
column_title	passed to 'ComplexHeatmap::Heatmap'
row_title	passed to 'ComplexHeatmap::Heatmap'
column_title_side	passed to 'ComplexHeatmap::Heatmap'
na_col	color for NA cells
...	passed to 'ComplexHeatmap::Heatmap'

Value

a Heatmap object

plger/scDblFinder documentation built on Oct. 19, 2024, 6:26 a.m.