Files in plger/scDblFinder
scDblFinder
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/workflows/check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/atac.R
R/atac_processing.R
R/clustering.R
R/computeDoubletDensity.R
R/doubletThresholding.R
R/enrichment.R
R/findDoubletClusters.R
R/getArtificialDoublets.R
R/getFragmentOverlaps.R
R/misc.R
R/plotting.R
R/recoverDoublets.R
R/scDblFinder.R
README.md
_pkgdown.yml
inst/CITATION
inst/NEWS
inst/docs/scDblFinder_comparison.png
inst/docs/sticker.svg
inst/extdata/example_fragments.tsv.gz
man/TFIDF.Rd
man/addDoublets.Rd
man/aggregateFeatures.Rd
man/amulet.Rd
man/amuletFromCounts.Rd
man/clamulet.Rd
man/clusterStickiness.Rd
man/computeDoubletDensity.Rd
man/createDoublets.Rd
man/cxds2.Rd
man/directDblClassification.Rd
man/doubletPairwiseEnrichment.Rd
man/doubletThresholding.Rd
man/fastcluster.Rd
man/findDoubletClusters.Rd
man/getArtificialDoublets.Rd
man/getCellPairs.Rd
man/getExpectedDoublets.Rd
man/getFragmentOverlaps.Rd
man/mockDoubletSCE.Rd
man/plotDoubletMap.Rd
man/plotThresholds.Rd
man/propHomotypic.Rd
man/recoverDoublets.Rd
man/scDblFinder.Rd
man/selFeatures.Rd
tests/testthat.R
tests/testthat/test-computeDoubletDensity.R
tests/testthat/test-findDoubletClusters.R
tests/testthat/test-recoverDoublets.R
tests/testthat/test-scDblFinder.R
vignettes/computeDoubletDensity.Rmd
vignettes/findDoubletClusters.Rmd
vignettes/introduction.Rmd
vignettes/recoverDoublets.Rmd
vignettes/scATAC.Rmd
vignettes/scDblFinder.Rmd
