meltSE: meltSE

In plger/sechm: sechm: Complex Heatmaps from a SummarizedExperiment

meltSE

Description

Melts a SE object into a ggplot-ready long data.frame.

Usage

meltSE(
  x,
  features,
  assayName = NULL,
  colDat.columns = NULL,
  rowDat.columns = NULL,
  flatten = TRUE,
  baseDF = TRUE
)

Arguments

x	An object of class SummarizedExperiment-class
features	A vector of features (i.e. row.names) to include. Use 'features=NULL' to include all.
assayName	The name(s) of the assay(s) to use. If NULL and the assays are named, all of them will be included.
colDat.columns	The colData columns to include (defaults includes all). Use 'colDat.columns=NA' in order not to include any.
rowDat.columns	The rowData columns to include (default all). Use 'rowData=NA' to not include any.
flatten	Logical, whether to flatten nested data.frames.
baseDF	Logical, whether to return a base data.frame (removing columns containing other objects such as atomic lists). Filtering is applied after flattening.

Value

A data.frame (or a DataFrame).

Examples

data("Chen2017", package="sechm")
head(meltSE(Chen2017,"Fos"))

plger/sechm documentation built on Nov. 21, 2023, 8:53 p.m.