getDEA: getDEA
In plger/sechm: sechm: Complex Heatmaps from a SummarizedExperiment
getDEA R Documentation
getDEA
Description
Extracts (standardized) DEA results from the rowData of an SE object.
Usage
getDEA(se, dea = NULL, homogenize = FALSE, sort = TRUE)
Arguments
se
A SummarizedExperiment-class,
with DEAs each saved as a rowData column of 'se', with the column name
prefixed with "DEA."
dea
The optional name of the DEA to extract
homogenize
Logical; whether to homogenize the DEA
sort
Logical; whether to return the table sorted by significance
Value
The DEA data.frame if 'dea' is given, otherwise a named list of
data.frames.
Examples
# loading example SE
data("Chen2017", package="sechm")
# this ones doesn't have saved DEAs in the standard format:
getDEA(Chen2017)
plger/sechm documentation built on Nov. 15, 2024, 5:08 a.m.
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| getDEA | R Documentation |
getDEA
Description
Extracts (standardized) DEA results from the rowData of an SE object.
Usage
getDEA(se, dea = NULL, homogenize = FALSE, sort = TRUE)
Arguments
se |
A |
dea |
The optional name of the DEA to extract |
homogenize |
Logical; whether to homogenize the DEA |
sort |
Logical; whether to return the table sorted by significance |
Value
The DEA data.frame if 'dea' is given, otherwise a named list of data.frames.
Examples
# loading example SE
data("Chen2017", package="sechm")
# this ones doesn't have saved DEAs in the standard format:
getDEA(Chen2017)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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