getscores: Sum score contributions for each kinase across all...
In pll21/pKSEA: Prediction-Based Kinase-Substrate Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
Sum score contributions for each kinase across all phosphopeptides
Usage
1
getscores(matched_data)
Arguments
matched_data
Input with calculated contributions
Value
A dataframe with each kinase as a row and raw kinase activity change score (KAC) calculated
Examples
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#Read in example summary statistics dataset from csv
summarydata_ex <- read.csv(system.file("extdata", "example_data1.csv", package="pKSEA"))
#Get matched data using predictions from NetworKIN
matched_data_ex <- get_matched_data(summarydata_ex, NetworKINPred_db)
#Calculate contributions
calc_ex <- calc_contribution(matched_data_ex)
#Calculate kinase activity change scores
kac_ex <- getscores(calc_ex)
pll21/pKSEA documentation built on May 27, 2019, 8:46 a.m.
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Description Usage Arguments Value Examples
Description
Sum score contributions for each kinase across all phosphopeptides
Usage
1 | getscores(matched_data)
|
Arguments
matched_data |
Input with calculated contributions |
Value
A dataframe with each kinase as a row and raw kinase activity change score (KAC) calculated
Examples
1 2 3 4 5 6 7 8 9 10 11 | #Read in example summary statistics dataset from csv
summarydata_ex <- read.csv(system.file("extdata", "example_data1.csv", package="pKSEA"))
#Get matched data using predictions from NetworKIN
matched_data_ex <- get_matched_data(summarydata_ex, NetworKINPred_db)
#Calculate contributions
calc_ex <- calc_contribution(matched_data_ex)
#Calculate kinase activity change scores
kac_ex <- getscores(calc_ex)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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