Description Usage Arguments Examples
Output only: uses results from compare(), outputs up to three files labeled full.csv and no_ksea.csv and ksea_only.csv appended to an output name (KSEA-filtered results only if KSEA database was provided to compare()).
1 2 | results_write(full_ksea.results, outputpath = tempdir(), outputname,
singlefolder = NULL)
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full_ksea.results |
results from compare() including full and optional KSEA excluded and exclusive results |
outputpath |
parent directory for output, defaults to tempdir() unless defined by user |
outputname |
file name of output |
singlefolder |
if desired, name of output folder within output directory. Default is separate folders for each compare() run |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | #Read in example summary statistics dataset from csv
summarydata_ex <- read.csv(system.file("extdata", "example_data1.csv", package="pKSEA"))
#Get matched data using predictions from NetworKIN
matched_data_ex <- get_matched_data(summarydata_ex, NetworKINPred_db)
#Perform single run of pKSEA analysis
single_run_results_ex <- run_on_matched(matched_data_ex, n_permutations = 10)
#Export results to R session temporary directory
## Not run:
results_write(single_run_results_ex, outputpath= tempdir(), outputname= "example")
## End(Not run)
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