get.weights: Get precalculated statistical test weights

Description Usage Arguments Value Author(s) Examples

View source: R/metaseqr.util.R

Description

This function returns pre-calculated weights for human, chimpanzee, mouse, fruitfly and arabidopsis based on the performance of simulated datasets estimated from real data from the ReCount database (http://bowtie-bio.sourceforge.net/recount/). Currently pre-calculated weights are available only when all six statistical tests are used and for normalization with EDASeq. For other combinations, use the estimate.aufc.weights function.

Usage

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    get.weights(org = c("human", "chimpanzee", "mouse",
        "fruitfly", "arabidopsis"))

Arguments

org

"human", "chimpanzee", "mouse", "fruitfly" or "arabidopsis".

Value

A named vector of convex weights.

Author(s)

Panagiotis Moulos

Examples

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wh <- get.weights("human")

pmoulos/metaseqR documentation built on Dec. 21, 2020, 6:19 a.m.