glComputeToxInd: Create toxicological indicator values for all chemicals in...

In pmpsa-hpc/GladiaTOX: R Package for Processing High Content Screening data

Create toxicological indicator values for all chemicals in input

Description

This function computes the toxicological indicator value for the assay source id in input.

Usage

glComputeToxInd(asid, tp = NULL, stat = quote(modl_acc))

Arguments

asid	assay source id
tp	Time point to report
stat	statistic to plot

Details

This function is useful to compute toxicological indicator values. These values, for each chemical, represent an average impact of the chemical across the list of endpoints tested. The function transform the data to minus log scale. Hence the larger the indicator value, larger is the impact of the chemical.

Value

A data.table with toxicological severity index for each chemical.

Examples

## Store the current config settings, so they can be reloaded at the end
## of the examples
conf_store <- gtoxConfList()
gtoxConfDefault()

## Compute toxicological severity index
dat <- glComputeToxInd(asid = 1L)
dat[]

pmpsa-hpc/GladiaTOX documentation built on Sept. 1, 2023, 5:52 p.m.