gtoxLoadClib: Load chemical library information

In pmpsa-hpc/GladiaTOX: R Package for Processing High Content Screening data

Load chemical library information

Description

gtoxLoadClib queries the gtox databases and returns information about the chemial library.

Usage

gtoxLoadClib(field = NULL, val = NULL)

Arguments

field	Character of length 1, 'chid' or 'clib', whether to search by chemical id (chid), or chemical library (clib)
val	The values to query on

Details

Chemicals are stored in different libraries by chemcial ID. Therefore, it is not possible to delineate samples with the same chemical ID into two distinct chemical libraries. However, it is possible for a chemcial ID to belong to more than one (or no) chemical libraries.

When chemicals belong to more than one library, the chemical is listed multiple times (one for each distinct library).

Value

A data.table with the chemical library information for the given parameters.

Examples

## Store the current config settings, so they can be reloaded at the end
## of the examples
conf_store <- gtoxConfList()
gtoxConfDefault()

## Passing no parameters gives all of the chemical ISs that have a chemical
## library registered
clib <- gtoxLoadClib()

## Reset configuration
options(conf_store)

pmpsa-hpc/GladiaTOX documentation built on Sept. 1, 2023, 5:52 p.m.