all-generics | Generic functions for S3 class SansSouci |
calibrate | Perform JER calibration from randomization p-values |
confCurveFromFam | Confidence bounds on the true/false positives among most... |
curveMaxFP | Upper bound for the number of false discoveries among most... |
curveMaxFP_alternatives | Upper bound for the number of false discoveries among most... |
curveVstar_tree | Generate one-sided p-values associated to a given signal with... |
dyadic | Create a complete dyadic tree structure |
fit.SansSouci | Fit SansSouci object |
fit.SansSouciStruct | Fit SansSouciStruct object |
formatBounds | Table of bounds |
gauss_bloc | Generate a block of signal of Gaussian shape |
gaussianSamples | Simulate equi-correlated data |
gaussianTestStatistics | Simulate Gaussian test statistics |
gen.mu.leaves | Generate the signal in the leaves of the tree |
gen.mu.noleaves | Generate an unstructured signal |
gen.p.values | Generate one-sided p-values associated to a given signal with... |
get_perm | Get permutation statistics and p-values |
get_pivotal_stat | Get a vector of pivotal statistics associated to permutation... |
maxFDP | Upper bound for the false discovery proportion in a selection |
maxFP | Upper bound for the number of false discoveries in a... |
minTDP | Lower bound for the true discovery proportion in a selection |
minTP | Lower bound for the number of true discoveries in a selection |
plotConfCurve | Plot confidence bound |
plot.SansSouci | Plot confidence bound on the true/false positives among most... |
posthocBySimes | post hoc bound obtained from Simes' inequality |
predict.SansSouci | Post hoc confidence bounds on the true/false positives |
reexports | Objects exported from other packages |
reference-families | Reference families |
rowBinomialTests | Binomial proportion tests for each row of a matrix |
rowPearsonCorrelationTests | Pearson's correlation test for rows of a matrix |
rowWelchTests | Welch T-tests for rows of a matrix |
rowWilcoxonTests | Wilcoxon rank sum tests for each row of a matrix |
rowZTests | Z tests for rows of a matrix |
SansSouci | Create an object of class 'SansSouci' |
SansSouciDyadic | Create an object of class 'SansSouciStruct' with a dyadic... |
SansSouci-methods | Basic methods for class 'SansSouci' |
SansSouciSim | Create an object of class 'SansSouci' from simulations |
SansSouciStruct | Create an object of class 'SansSouciStruct' |
SansSouciStruct-methods | Basic methods for class 'SansSouciStruct' |
testByRandomization | Randomization-based testing |
volcanoPlot | Volcano plot |
volcanoPlot.numeric | Volcano plot |
V.star | Post hoc bound on the number of false positives |
zeta | Estimate the number of true null hypotheses among a set of... |
zetas.tree | Estimate of the proportion of true nulls in each node of a... |
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