Man pages for pneuvial/sanssouci
Post Hoc Multiple Testing Inference
| all-generics | Generic functions for S3 class SansSouci |
| bootstrap_permutation | Mass-univariate bootstrap-based inference for contrasts in a... |
| calibrate | Perform JER calibration from randomization p-values |
| calibration_bootstap | Calibration of post hoc bound using bootstrap permutations |
| confCurveFromFam | Confidence bounds on the true/false positives among most... |
| curveMaxFP | Upper bound for the number of false discoveries among most... |
| curveMaxFP_alternatives | Upper bound for the number of false discoveries among most... |
| curve.V.star.forest | Compute a curve of post hoc bounds based on a reference... |
| delete.gaps | Delete the gaps induced by pruning |
| dyadic | Create a complete dyadic tree structure |
| fit.SansSouci | Fit SansSouci object |
| fit.SansSouciStruct | Fit SansSouciStruct object |
| forest.completion | Complete a forest structure |
| formatBounds | Table of bounds |
| gauss_bloc | Generate a block of deterministic signal of Gaussian shape |
| gaussianSamples | Simulate equi-correlated data |
| gaussianTestStatistics | Simulate Gaussian test statistics |
| gen.mu.leaves | Generate the signal in the leaves of the tree |
| gen.mu.noleaves | Generate an unstructured signal |
| gen.p.values | Generate one-sided p-values associated to a given signal with... |
| get_perm | Get permutation statistics and p-values |
| get_pivotal_stat | Get a vector of pivotal statistics associated to permutation... |
| lm_test | Mass-univariate inference for contrasts in a linear model |
| maxFDP | Upper bound for the false discovery proportion in a selection |
| maxFP | Upper bound for the number of false discoveries in a... |
| mini_batch_rowTestFUN | Mini batch version of a rowTestFUN function. |
| minTDP | Lower bound for the true discovery proportion in a selection |
| minTP | Lower bound for the number of true discoveries in a selection |
| nb.elements | Number of unique regions in a reference family with forest... |
| plotConfCurve | Plot confidence bound |
| plot.SansSouci | Plot confidence bound on the true/false positives among most... |
| posthocBySimes | post hoc bound obtained from Simes' inequality |
| predict.SansSouci | Post hoc confidence bounds on the true/false positives |
| pruning | Prune a forest structure to speed up computations |
| reexports | Objects exported from other packages |
| reference-families | Reference families |
| rowBinomialTests | Binomial proportion tests for each row of a matrix |
| rowPearsonCorrelationTests | Pearson's correlation test for rows of a matrix |
| rowWelchTests | Welch T-tests for rows of a matrix |
| rowWilcoxonTests | Wilcoxon rank sum tests for each row of a matrix |
| rowZTests | Z tests for rows of a matrix |
| SansSouci | Create an object of class 'SansSouci' |
| SansSouciDyadic | Create an object of class 'SansSouciStruct' with a dyadic... |
| SansSouci-methods | Basic methods for class 'SansSouci' |
| SansSouciSim | Create an object of class 'SansSouci' from simulations |
| SansSouciStruct | Create an object of class 'SansSouciStruct' |
| SansSouciStruct-methods | Basic methods for class 'SansSouciStruct' |
| testByRandomization | Randomization-based testing |
| volcanoPlot | Volcano plot |
| volcanoPlot.numeric | Volcano plot |
| V.star | Post hoc bound on the number of false positives |
| zeta | Estimate the number of true null hypotheses among a set of... |
| zetas.tree | Estimate of the proportion of true nulls in each node of a... |
