plot.SansSouci: Plot confidence bound on the true/false positives among most...

In pneuvial/sanssouci: Post Hoc Multiple Testing Inference

Plot confidence bound on the true/false positives among most significant items

Description

Plot confidence bound on the true/false positives among most significant items

Usage

## S3 method for class 'SansSouci'
plot(x, y, xmax = nHyp(x), ...)

Arguments

x	An object of class 'SansSouci'
y	Not used
xmax	Right limit of the plot
...	Further arguments to be passed to bound

Examples

# Generate Gaussian data and perform multiple tests
obj <- SansSouciSim(m = 502, rho = 0.5, n = 100, pi0 = 0.8, SNR = 3, prob = 0.5)
res <- fit(obj, B = 100, alpha = 0.1)

# confidence curve
plot(res)

# confidence curve for a subset of hypotheses
S <- which(pValues(res) < 0.1 & foldChanges(res) > 0.3)
plot(res, S = S)

pneuvial/sanssouci documentation built on Feb. 12, 2024, 4:18 a.m.