Files in pneuvial/sanssouci
Post hoc inference through JFWER control

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/RcppExports.R R/SimesPivotalStatistic.R R/SimesThresholdFamily.R R/biSort.R R/calibrateJER.R R/calibrateJER0.R R/curveMaxFP.R R/empiricalCoverage.R R/gaussianSamples.R R/gaussianTestStatistics.R R/getFactorModelCovarianceMatrix.R R/getSummaryStats.R R/k.max.R R/kFWERPivotalStatistic.R R/kFWERThresholdFamily.R R/minPseudoRanksR.R R/partialColSortDesc.R R/posthocBySimes.R R/posthoc_bounds.R R/rowWelchTests.R R/sansSouci.R R/simulateFactorModelNullsFromSingularValuesAndLoadings.R R/simulateGaussianEquiCorrelatedNulls.R R/simulateGaussianNullsFromFactorModel.R R/simulateGaussianNullsFromSigma.R R/simulateMein2006.R R/suffWelchTest.R R/testByRandomization.R R/thresholdFamily.R R/tree_functions.R R/tree_simulation_functions.R R/wilcoxStat.R README.md
appveyor.yml
data/volcano.rda
docs/articles/index.html
docs/articles/postHocBoundAlgo.html
docs/articles/stepDownControl.html
docs/articles/stepDownControl_files/figure-html/JFWER_SD-1.png
docs/articles/stepDownControl_files/figure-html/testStat-1.png
docs/articles/two-sample.html
docs/articles/two-sample.nb.html
docs/articles/two-sample_files/figure-html/unnamed-chunk-1-1.png
docs/articles/two-sample_files/figure-html/unnamed-chunk-3-1.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BetaThresholdFamily.html
docs/reference/SimesPivotalStatistic.html
docs/reference/SimesThresholdFamily.html
docs/reference/bisort.html
docs/reference/empiricalCoverage.html
docs/reference/empiricalCoverageO.html
docs/reference/falseDiscoveryEnvelope-1.png
docs/reference/falseDiscoveryEnvelope.html
docs/reference/falseDiscoveryProportionControl-1.png
docs/reference/falseDiscoveryProportionControl.html
docs/reference/falseDiscoveryProportionEnvelope-1.png
docs/reference/falseDiscoveryProportionEnvelope.html
docs/reference/getFactorModelCovarianceMatrix.html
docs/reference/getSummaryStats.html
docs/reference/index.html
docs/reference/jointFWERControl-1.png
docs/reference/jointFWERControl-2.png
docs/reference/jointFWERControl.html
docs/reference/k.max.html
docs/reference/kFWERPivotalStatistic.html
docs/reference/kFWERThresholdFamily.html
docs/reference/marginalKFWER.html
docs/reference/minPseudoRanks.html
docs/reference/partialColSortDesc.html
docs/reference/partialColSortDescCpp.html
docs/reference/posthocBySimes.html
docs/reference/rowSortDesc.html
docs/reference/rowWelchTests.html
docs/reference/simulateEqui-1.png
docs/reference/simulateEqui.html
docs/reference/simulateEquiByRandomization-1.png
docs/reference/simulateEquiByRandomization-2.png
docs/reference/simulateEquiByRandomization.html
docs/reference/simulateFactorModelNullsFromSingularValuesAndLoadings-1.png
docs/reference/simulateFactorModelNullsFromSingularValuesAndLoadings-2.png
docs/reference/simulateFactorModelNullsFromSingularValuesAndLoadings.html
docs/reference/simulateGaussianEquiCorrelatedNulls.html
docs/reference/simulateGaussianNullsFromFactorModel-1.png
docs/reference/simulateGaussianNullsFromFactorModel-2.png
docs/reference/simulateGaussianNullsFromFactorModel-3.png
docs/reference/simulateGaussianNullsFromFactorModel-4.png
docs/reference/simulateGaussianNullsFromFactorModel.html
docs/reference/simulateGaussianNullsFromSigma-1.png
docs/reference/simulateGaussianNullsFromSigma-2.png
docs/reference/simulateGaussianNullsFromSigma-3.png
docs/reference/simulateGaussianNullsFromSigma-4.png
docs/reference/simulateGaussianNullsFromSigma-5.png
docs/reference/simulateGaussianNullsFromSigma.html
docs/reference/simulateMein2006-1.png
docs/reference/simulateMein2006.html
docs/reference/simulateToeplitz-1.png
docs/reference/simulateToeplitz.html
docs/reference/suffWelchTest.html
docs/reference/testByRandomization-1.png
docs/reference/testByRandomization-2.png
docs/reference/testByRandomization.html
docs/reference/thresholdFamily.html
docs/reference/twoGroupPermutationTest.html
docs/reference/upperBoundFP.html
docs/reference/wilcoxStat.html
inst/BNR/JFWERcontrol/00.setup.R inst/BNR/JFWERcontrol/01.runSimulations.R inst/BNR/JFWERcontrol/02.tidyResults.R inst/BNR/JFWERcontrol/03.plotJFWER.R inst/BNR/JFWERcontrol/04.plotJFWER-paper.R inst/BNR/averagePower/00.setup.R inst/BNR/averagePower/01.runSimulations.R inst/BNR/averagePower/03.plotPowerVsJFWER.R inst/BNR/detectionPower/00.setup.R inst/BNR/detectionPower/01.runSimulations.R inst/BNR/detectionPower/03.plotPowerVsJFWER.R inst/BNR/lambda-calibration/00_setup.R inst/BNR/lambda-calibration/01_lambda-calibration.R inst/BNR/lambda-calibration/02_plot_lambda-vs-rho.R inst/BNR/power/00.setup.R inst/BNR/power/01.runSimulations.R inst/BNR/power/03.plotPowerVsJFWER.R inst/BNR/power/03.tidyResults.R inst/BNR/power/03b.plotPowerVsJFWER,indep.R inst/BNR/testStepDown.R inst/DBNR/envelopes/00_setup.R inst/DBNR/envelopes/01_run-simulations.R inst/DBNR/envelopes/02_read-results.R inst/DBNR/envelopes/03_ggplot.R inst/DBNR/envelopes/04_ggplot-paper.R inst/DBNR/envelopes/run_one_simu.hulk.R inst/DBNR/envelopes/simu.hulk.R
inst/extdata/calibrateJER0_results.rds
inst/shiny-examples/volcano-plot.R inst/system/create-volcano-plot-data.R inst/testScripts/20170111,futures.R inst/testScripts/benchmarkJFWER.R inst/testScripts/dichotomyVsPivotalStat.R inst/testScripts/getJointFWERThresholds.R inst/testScripts/speed_rowWelchTests.R man/SimesThresholdFamily.Rd man/V.star.Rd man/calibrateJER.Rd man/curveMaxFP.Rd man/dyadic.from.leaf_list.Rd man/gaussianSamples.Rd man/gaussianTestStatistics.Rd man/maxFP.Rd man/minTP.Rd man/posthocBySimes.Rd man/rowWelchTests.Rd man/suffWelchTest.Rd man/testByRandomization.Rd man/wilcoxStat.Rd man/zetas.tree.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/coverage.cpp
src/marginalKFWER.cpp
src/minPseudoRanks.cpp
src/partialColSortDesc.cpp
src/posthocBySimes.cpp
src/rowSortDesc.cpp
src/testByRandomization.cpp
tests/testthat.R tests/testthat/test_calibrateJER.R tests/testthat/test_calibrateJER0.R tests/testthat/test_gaussianSamples.R tests/testthat/test_gaussianTestStatistics.R tests/testthat/test_minPseudoRanks.R tests/testthat/test_posthoc_bounds.R tests/testthat/test_rowWelchTests.R tests/testthat/test_simes.R tests/testthat/test_testByRandomization.R tests/testthat/test_testStatGeneration.R tests/testthat/test_upperBoundFP.R vignettes/Simes_equi-correlation.Rmd vignettes/confidenceEnvelopes_localized.Rmd vignettes/jointErrorRateCalibration_simulations.Rmd
vignettes/sansSouci.bib
vignettes/stepDownControl.Rmd
pneuvial/sanssouci documentation built on June 24, 2018, 1:11 a.m.