makektudb: Build KTU taxonomy assignment database by tetranucleotide...
In poyuliu/KTU: “KTU” (K-mer Taxonomic Unit) algorithm improves biological relevance in microbiome associated study
makektudb R Documentation
Build KTU taxonomy assignment database by tetranucleotide frequency table
Description
make KTU db
Usage
makektudb(input.fasta, input.taxa, pscore = FALSE, output.file = NULL)
Arguments
input.fasta
input database fasta file (trimmed)
input.taxa
input database taxonomy file
pscore
pscore=TRUE/FLASE: using k-mer present scores (tetranucleotide features 0:absent; 1:present in one direction; 2:present in both direction of a sequence)/k-mer frequency
output.file
(optional) the directory for output RDS format file
poyuliu/KTU documentation built on May 23, 2022, 11:06 a.m.
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| makektudb | R Documentation |
Build KTU taxonomy assignment database by tetranucleotide frequency table
Description
make KTU db
Usage
makektudb(input.fasta, input.taxa, pscore = FALSE, output.file = NULL)
Arguments
input.fasta |
input database fasta file (trimmed) |
input.taxa |
input database taxonomy file |
pscore |
pscore=TRUE/FLASE: using k-mer present scores (tetranucleotide features 0:absent; 1:present in one direction; 2:present in both direction of a sequence)/k-mer frequency |
output.file |
(optional) the directory for output RDS format file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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