trim.primer: Prepare KTU taxonomy assignment database by trimming primers
In poyuliu/KTU: “KTU” (K-mer Taxonomic Unit) algorithm improves biological relevance in microbiome associated study
trim.primer R Documentation
Prepare KTU taxonomy assignment database by trimming primers
Description
Trim primer sequences of full length 16S/18S/target gene database by PCR primers
Usage
trim.primer(fasta, forseq, revseq, output.name = NULL, progress = TRUE)
Arguments
fasta
input database fasta file
forseq
forward primer sequence (5' -> 3')
revseq
reverse primer sequence (5' -> 3')
output.name
(optional) the name for output file
progress
show the processing progress
poyuliu/KTU documentation built on May 23, 2022, 11:06 a.m.
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| trim.primer | R Documentation |
Prepare KTU taxonomy assignment database by trimming primers
Description
Trim primer sequences of full length 16S/18S/target gene database by PCR primers
Usage
trim.primer(fasta, forseq, revseq, output.name = NULL, progress = TRUE)
Arguments
fasta |
input database fasta file |
forseq |
forward primer sequence (5' -> 3') |
revseq |
reverse primer sequence (5' -> 3') |
output.name |
(optional) the name for output file |
progress |
show the processing progress |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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