tetra.freq: Generate a kmer table from representative sequences
In poyuliu/KTU: “KTU” (K-mer Taxonomic Unit) algorithm improves biological relevance in microbiome associated study
tetra.freq R Documentation
Generate a kmer table from representative sequences
Description
Convert DNA sequences to tetranucleotide frequency table
Usage
tetra.freq(repseq, pscore = FALSE, file = TRUE)
Arguments
repseq
The fasta file path
file
logical, default is TRUE, loading DNA sequences from file. if 'file=FALSE', the 'repseq' is loaded from object.
Value
A 256 tetranucleotide combinations frequency table
poyuliu/KTU documentation built on May 23, 2022, 11:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| tetra.freq | R Documentation |
Generate a kmer table from representative sequences
Description
Convert DNA sequences to tetranucleotide frequency table
Usage
tetra.freq(repseq, pscore = FALSE, file = TRUE)
Arguments
repseq |
The fasta file path |
file |
logical, default is TRUE, loading DNA sequences from file. if 'file=FALSE', the 'repseq' is loaded from object. |
Value
A 256 tetranucleotide combinations frequency table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.