plotCalCurve: Older version of calibration curves. Kept for reproducibility...

In ppernot/ErrViewLib: Library for ErrView

Older version of calibration curves. Kept for reproducibility of papers.

Description

Older version of calibration curves. Kept for reproducibility of papers.

Usage

plotCalCurve(
  Data,
  corTrend = FALSE,
  fo = NA,
  CImeth = c("eq", "pred", "dist"),
  prob = seq(0.005, 0.995, by = 0.005),
  dist = c("norm", "t"),
  shape = 2,
  valid = c("kfold", "loo"),
  nFold = 10,
  nRepeat = 10,
  score = TRUE,
  binomCI = c("wilson", "wilsoncc", "clopper-pearson", "agresti-coull", "jeffreys"),
  title = "",
  label = 0,
  gPars = ErrViewLib::setgPars()
)

Arguments

Data	(data.frame) dataframe with predictor(s) and reference
corTrend	(logical) flag to correct trend
fo	(formula) trend correction formula
CImeth	(string) method to estimate CI limits
prob	(vector) a set of coverage probabilities to test
dist	(string) a distribution
shape	(numeric) shape parameter (> 0, maybe non-integer).
valid	(string) a cross-validation method: "kfold" (default) or "loo"
nFold	(integer) number of folds (default: 10)
nRepeat	(integer) number of repeats for k-fold cross-validation
title	(string) a title to display above the plot
label	(integer) index of letter for subplot tag
gPars	(list) graphical parameters
uP	(vector) a set of prediction uncertainties
mycols	(vector) a set of color indexes to gPars colors
plot	(logical) plot the results

Value

Invisibly returns a list of calibration statistics. Mainly used for its plotting side effect.

ppernot/ErrViewLib documentation built on June 1, 2024, 4:33 a.m.