prabhakarlab/Banksy: Spatial transcriptomic clustering

Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that capture gene expression gradients. These features are combined with the cell's own expression to embed cells in a neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.

Getting started

Package details

Bioconductor views Clustering DimensionReduction GeneExpression SingleCell Spatial
Maintainer
Licensefile LICENSE
Version0.99.13
URL https://github.com/prabhakarlab/Banksy
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("prabhakarlab/Banksy")
prabhakarlab/Banksy documentation built on July 31, 2024, 7:37 p.m.