Banksy-package: The Banksy package

Banksy-packageR Documentation

The Banksy package

Description

Banksy is a library and R package for network analysis.

Description

Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that capture gene expression gradients. These features are combined with the cell's own expression to embed cells in a neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.

Details

For a quick start to the package, please refer to the GitHub page at https://github.com/prabhakarlab/Banksy. For in-depth guides to package functionality and use cases, refer to the package webpage at https://prabhakarlab.github.io/Banksy.

Author(s)

Maintainer: Joseph Lee joseph.lee@u.nus.edu (ORCID)

Authors:

  • Vipul Singhal

See Also

Useful links:


prabhakarlab/Banksy documentation built on July 31, 2024, 7:37 p.m.