Banksy-package: The Banksy package
In prabhakarlab/Banksy: Spatial transcriptomic clustering
Banksy-package R Documentation
The Banksy package
Description
Banksy is a library and R package for network analysis.
Description
Banksy is an R package that incorporates spatial information to cluster
cells in a feature space (e.g. gene expression). To incorporate spatial
information, BANKSY computes the mean neighborhood expression and azimuthal
Gabor filters that capture gene expression gradients. These features are
combined with the cell's own expression to embed cells in a
neighbor-augmented product space which can then be clustered, allowing for
accurate and spatially-aware cell typing and tissue domain segmentation.
Details
For a quick start to the package, please refer to the GitHub page at
https://github.com/prabhakarlab/Banksy. For in-depth guides to package
functionality and use cases, refer to the package webpage at
https://prabhakarlab.github.io/Banksy.
Author(s)
Maintainer: Joseph Lee joseph.lee@u.nus.edu (ORCID)
Authors:
Vipul Singhal
See Also
Useful links:
prabhakarlab/Banksy documentation built on April 11, 2024, 2:45 p.m.
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| Banksy-package | R Documentation |
The Banksy package
Description
Banksy is a library and R package for network analysis.
Description
Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that capture gene expression gradients. These features are combined with the cell's own expression to embed cells in a neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.
Details
For a quick start to the package, please refer to the GitHub page at https://github.com/prabhakarlab/Banksy. For in-depth guides to package functionality and use cases, refer to the package webpage at https://prabhakarlab.github.io/Banksy.
Author(s)
Maintainer: Joseph Lee joseph.lee@u.nus.edu (ORCID)
Authors:
Vipul Singhal
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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