Files in prabhakarlab/Banksy
Spatial transcriptomic clustering
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/Banksy-package.R
R/cluster.R
R/computation.R
R/data.R
R/misc.R
R/reduction.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
data/hippocampus.rda
data/rings.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/batch-correction.html
docs/articles/domain-segment.html
docs/articles/figures/batch-correction-spatial-1.png
docs/articles/figures/batch-correction-umap-1.png
docs/articles/figures/domain-segment-spatial-1.png
docs/articles/figures/multi-sample-spatial-1.png
docs/articles/figures/multi-sample-umap-1.png
docs/articles/figures/parameter-selection-spatial-1.png
docs/articles/index.html
docs/articles/multi-sample.html
docs/articles/parameter-selection.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Banksy-package.html
docs/reference/Rplot001.png
docs/reference/clusterBanksy.html
docs/reference/clusterNames.html
docs/reference/compareClusters.html
docs/reference/computeBanksy.html
docs/reference/connectClusters.html
docs/reference/figures/README-unnamed-chunk-12-1.png
docs/reference/figures/README-unnamed-chunk-13-1.png
docs/reference/figures/README-unnamed-chunk-14-1.png
docs/reference/figures/README-unnamed-chunk-15-1.png
docs/reference/getBanksyMatrix.html
docs/reference/hippocampus.html
docs/reference/index.html
docs/reference/rings.html
docs/reference/runBanksyPCA.html
docs/reference/runBanksyUMAP.html
docs/reference/simulateDataset-1.png
docs/reference/simulateDataset.html
docs/reference/smoothLabels.html
docs/sitemap.xml
inst/CITATION
inst/extdata/STARmap.rds
inst/script/rings.R
man/Banksy-package.Rd
man/clusterBanksy.Rd
man/clusterNames.Rd
man/compareClusters.Rd
man/computeBanksy.Rd
man/connectClusters.Rd
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-13-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-15-1.png
man/getBanksyMatrix.Rd
man/hippocampus.Rd
man/rings.Rd
man/runBanksyPCA.Rd
man/runBanksyUMAP.Rd
man/simulateDataset.Rd
man/smoothLabels.Rd
tests/testthat.R
tests/testthat/test-cluster.R
tests/testthat/test-computation.R
tests/testthat/test-misc.R
tests/testthat/test-reduction.R
vignettes/.gitignore
vignettes/batch-correction.Rmd
vignettes/domain-segment.Rmd
vignettes/figures/batch-correction-spatial-1.png
vignettes/figures/batch-correction-umap-1.png
vignettes/figures/domain-segment-spatial-1.png
vignettes/figures/multi-sample-spatial-1.png
vignettes/figures/multi-sample-umap-1.png
vignettes/figures/parameter-selection-spatial-1.png
vignettes/multi-sample.Rmd
vignettes/parameter-selection.Rmd
