clusterNames: Get names of clustering runs.
In prabhakarlab/Banksy: Spatial transcriptomic clustering
clusterNames R Documentation
Get names of clustering runs.
Description
Get names of clustering runs.
Usage
clusterNames(se)
Arguments
se
A SpatialExperiment,
SingleCellExperiment or SummarizedExperiment
object with clusterBanksy ran.
Value
A character vector of names of clustering runs.
Examples
data(rings)
spe <- computeBanksy(rings, assay_name = "counts", M = 1, k_geom = c(15, 30))
spe <- runBanksyPCA(spe, M = 1, lambda = c(0, 0.2), npcs = 20)
spe <- clusterBanksy(spe, M = 1, lambda = c(0, 0.2), resolution = 1)
clusterNames(spe)
prabhakarlab/Banksy documentation built on July 31, 2024, 7:37 p.m.
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| clusterNames | R Documentation |
Get names of clustering runs.
Description
Get names of clustering runs.
Usage
clusterNames(se)
Arguments
se |
A |
Value
A character vector of names of clustering runs.
Examples
data(rings)
spe <- computeBanksy(rings, assay_name = "counts", M = 1, k_geom = c(15, 30))
spe <- runBanksyPCA(spe, M = 1, lambda = c(0, 0.2), npcs = 20)
spe <- clusterBanksy(spe, M = 1, lambda = c(0, 0.2), resolution = 1)
clusterNames(spe)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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