PlotClusterImage: PlotClusterImage. Plot a segmentation image with the...

In prafols/rMSI: MSI Tools

Description

PlotClusterImage. Plot a segmentation image with the user-given clusters.

Usage

PlotClusterImage(
  posMat,
  clusters,
  rotate = 0,
  pixel_size_um = 100,
  labels_x = NULL,
  labels_y = NULL,
  labels_text = NULL
)

Arguments

posMat	a two columns matrix where first column ara the x coodrinates of values and second column the y coordinates.
clusters	a vector with integer number according the cluster of each pixel.
rotate	rotation to apply.
pixel_size_um	the pixel resolution in um.
labels_x	x coordinates of text labels optionally overlaid to the plot.
labels_y	y coordinates of text labels optionally overlaid to the plot.
labels_text	text labels optionally overlaid to the plot.

Value

a vector with the used color for each cluster sorted according clustering numering in assending order.

prafols/rMSI documentation built on Dec. 12, 2021, 7:29 p.m.