import_imzML: import_imzML.

Description Usage Arguments Value

View source: R/imzMLreader.R

Description

import_imzML.

Usage

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import_imzML(
  imzML_File,
  ibd_File = paste(sub("\\.[^.]*$", "", imzML_File), ".ibd", sep = ""),
  ramdisk_path,
  fun_progress = NULL,
  fun_text = NULL,
  close_signal = NULL,
  verifyChecksum = F,
  subImg_rename = NULL,
  subImg_Coords = NULL,
  convertProcessed2Continuous = T
)

Arguments

imzML_File

full path to .imzML file.

ibd_File

path to the binary file (default the same as imzML file but with .ibd extension)

ramdisk_path

where the ramdisk will be created.

fun_progress

This is a callback function to update the progress of loading data. See details for more information.

fun_text

This is a callback function to update the label widget of loading data. See details for more information.

close_signal

function to be called if loading process is abored.

verifyChecksum

if the binary file checksum must be verified, it is disabled by default for convenice with really big files.

subImg_rename

alternative image name, a new ramdisk will be created with the given name.

subImg_Coords

a Complex vector with the motors coordinates to be included in the ramdisk.

convertProcessed2Continuous

if true (the default) an imzML file in processed mode will be converted to a continuous mode.

Imports an imzML image to an rMSI data object. It is recomanded to use rMSI::LoadMsiData directly instead of this function.

Value

an rMSI data object.


prafols/rMSI documentation built on Dec. 12, 2021, 7:29 p.m.