API for prioritizr/prioritizr
Systematic Conservation Prioritization in R

Global functions
A	Man page
A,OptimizationProblem-method	Man page
ArrayParameter	Man page
ArrayParameter-class	Man page
Collection	Man page
Collection-class	Man page
ConservationModifier	Man page
ConservationModifier-class	Man page
ConservationProblem	Man page
ConservationProblem-class	Man page
Constraint	Man page
Constraint-class	Man page
Decision	Man page
Decision-class	Man page
Id	Man page
MiscParameter	Man page
MiscParameter-class	Man page
Objective	Man page
Objective-class	Man page
OptimizationProblem	Man page
OptimizationProblem-class	Man page
OptimizationProblem-methods	Man page
Parameter	Man page
Parameter-class	Man page
Parameters	Man page
Parameters-class	Man page
Penalty	Man page
Penalty-class	Man page
Portfolio	Man page
Portfolio-class	Man page
ScalarParameter	Man page
ScalarParameter-class	Man page
Solver	Man page
Solver-class	Man page
Target	Man page
Target-class	Man page
Zones	Man page
Zones-class	Man page
ZonesCharacter	Man page
ZonesRaster	Man page
\%>\%	Man page
\%T>\%	Man page
add_absolute_targets	Man page
add_absolute_targets,ConservationProblem,character-method	Man page
add_absolute_targets,ConservationProblem,matrix-method	Man page
add_absolute_targets,ConservationProblem,numeric-method	Man page
add_absolute_targets-method	Man page
add_binary_decisions	Man page Source code
add_boundary_penalties	Man page Source code
add_connected_constraints	Man page Source code
add_connectivity_penalties	Man page
add_connectivity_penalties,ConservationProblem,ANY,ANY,Matrix-me	Man page
add_connectivity_penalties,ConservationProblem,ANY,ANY,array-met	Man page
add_connectivity_penalties,ConservationProblem,ANY,ANY,data.fram	Man page
add_connectivity_penalties,ConservationProblem,ANY,ANY,dgCMatrix	Man page
add_connectivity_penalties,ConservationProblem,ANY,ANY,matrix-me	Man page
add_contiguity_constraints	Man page
add_contiguity_constraints,ConservationProblem,ANY,ANY-method	Man page
add_contiguity_constraints,ConservationProblem,ANY,data.frame-me	Man page
add_contiguity_constraints,ConservationProblem,ANY,matrix-method	Man page
add_corridor_constraints	Man page Source code
add_cuts_portfolio	Man page Source code
add_default_decisions	Man page Source code
add_default_objective	Source code
add_default_portfolio	Source code
add_default_solver	Man page Source code
add_default_targets	Source code Source code
add_feature_contiguity_constraints	Man page
add_feature_contiguity_constraints,ConservationProblem,ANY,ANY-m	Man page
add_feature_contiguity_constraints,ConservationProblem,ANY,Matri	Man page
add_feature_contiguity_constraints,ConservationProblem,ANY,data.	Man page
add_feature_contiguity_constraints,ConservationProblem,ANY,matri	Man page
add_feature_weights	Man page
add_feature_weights,ConservationProblem,matrix-method	Man page
add_feature_weights,ConservationProblem,numeric-method	Man page
add_gurobi_solver	Man page Source code
add_locked_in_constraints	Man page
add_locked_in_constraints,ConservationProblem,Raster-method	Man page
add_locked_in_constraints,ConservationProblem,Spatial-method	Man page
add_locked_in_constraints,ConservationProblem,character-method	Man page
add_locked_in_constraints,ConservationProblem,logical-method	Man page
add_locked_in_constraints,ConservationProblem,matrix-method	Man page
add_locked_in_constraints,ConservationProblem,numeric-method	Man page
add_locked_out_constraints	Man page
add_locked_out_constraints,ConservationProblem,Raster-method	Man page
add_locked_out_constraints,ConservationProblem,Spatial-method	Man page
add_locked_out_constraints,ConservationProblem,character-method	Man page
add_locked_out_constraints,ConservationProblem,logical-method	Man page
add_locked_out_constraints,ConservationProblem,matrix-method	Man page
add_locked_out_constraints,ConservationProblem,numeric-method	Man page
add_loglinear_targets	Man page Source code
add_lpsymphony_solver	Man page Source code
add_lsymphony_solver	Man page
add_manual_locked_constraints	Man page
add_manual_locked_constraints,ConservationProblem,data.frame-met	Man page
add_manual_locked_constraints,ConservationProblem,tbl_df-method	Man page
add_manual_targets	Man page
add_manual_targets,ConservationProblem,data.frame-method	Man page
add_manual_targets,ConservationProblem,tbl_df-method	Man page
add_manual_targets-method	Man page
add_max_cover_objective	Man page Source code
add_max_features_objective	Man page Source code
add_max_phylo_objective	Man page Source code
add_max_utility_objective	Man page Source code
add_min_set_objective	Man page Source code
add_neighbor_constraints	Man page
add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY-method	Man page
add_neighbor_constraints,ConservationProblem,ANY,ANY,array-metho	Man page
add_neighbor_constraints,ConservationProblem,ANY,ANY,data.frame-	Man page
add_neighbor_constraints,ConservationProblem,ANY,ANY,matrix-meth	Man page
add_pool_portfolio	Man page Source code
add_proportion_decisions	Man page Source code
add_relative_targets	Man page
add_relative_targets,ConservationProblem,character-method	Man page
add_relative_targets,ConservationProblem,matrix-method	Man page
add_relative_targets,ConservationProblem,numeric-method	Man page
add_relative_targets-method	Man page
add_rsymphony_solver	Man page Source code
add_semicontinuous_decisions	Man page Source code
add_shuffle_portfolio	Man page Source code
align_text	Source code
any_solvers_installed	Source code
array_parameters	Man page
as	Man page
as.Id	Man page Source code
as.Id.character	Man page Source code
as.list,tbl_df-method	Man page
as.list.OptimizationProblem	Man page Source code
as.list.Parameters	Man page Source code
as.list.Zones	Man page Source code
binary_matrix_parameter	Man page Source code
binary_parameter	Man page Source code
binary_parameter_array	Man page Source code
binary_stack	Man page Source code
boundary_matrix	Man page Source code
boundary_matrix.Raster	Man page Source code
boundary_matrix.SpatialLines	Man page Source code
boundary_matrix.SpatialPoints	Man page Source code
boundary_matrix.SpatialPolygons	Man page Source code
boundary_matrix.default	Man page Source code
branch_matrix	Man page Source code
branch_matrix.default	Man page Source code
branch_matrix.phylo	Man page Source code
category_layer	Man page Source code
category_vector	Man page Source code
category_vector.data.frame	Man page Source code
category_vector.matrix	Man page Source code
check_that	Source code
col_ids	Man page
col_ids,OptimizationProblem-method	Man page
compile	Man page Source code
compile.ConservationProblem	Man page Source code
compressed_formulation	Man page
compressed_formulation,OptimizationProblem-method	Man page
connected_matrix	Man page Source code
connected_matrix.Raster	Man page Source code
connected_matrix.SpatialLines	Man page Source code
connected_matrix.SpatialPoints	Man page Source code
connected_matrix.SpatialPolygons	Man page Source code
connected_matrix.default	Man page Source code
connectivity_matrix	Man page
connectivity_matrix,Raster,Raster-method	Man page
connectivity_matrix,Spatial,Raster-method	Man page
connectivity_matrix,Spatial,character-method	Man page
constraints	Man page
decisions	Man page
default_solver_name	Source code
distribute_load	Man page Source code
fast_extract	Man page
fast_extract,Raster,SpatialLines-method	Man page
fast_extract,Raster,SpatialPoints-method	Man page
fast_extract,Raster,SpatialPolygons-method	Man page
feature_abundances	Man page Source code
feature_abundances.ConservationProblem	Man page Source code
feature_names	Man page
feature_names,ConservationProblem-method	Man page
feature_names,ZonesCharacter-method	Man page
feature_names,ZonesRaster-method	Man page
feature_representation	Man page
feature_representation,ConservationProblem,Raster-method	Man page
feature_representation,ConservationProblem,Spatial-method	Man page
feature_representation,ConservationProblem,data.frame-method	Man page
feature_representation,ConservationProblem,matrix-method	Man page
feature_representation,ConservationProblem,numeric-method	Man page
get_number_of_threads	Man page Source code
integer_parameter	Man page Source code
integer_parameter_array	Man page Source code
intersecting_units	Man page
intersecting_units,Raster,Raster-method	Man page
intersecting_units,Raster,Spatial-method	Man page
intersecting_units,Spatial,Raster-method	Man page
intersecting_units,Spatial,Spatial-method	Man page
intersecting_units,data.frame,ANY-method	Man page
is	Man page
is.Id	Man page Source code
is.Waiver	Man page Source code
is.parallel	Man page Source code
lb	Man page
lb,OptimizationProblem-method	Man page
loglinear_interpolation	Man page Source code
marxan_boundary_data_to_matrix	Man page Source code
marxan_problem	Man page Source code
marxan_problem.character	Man page Source code
marxan_problem.data.frame	Man page Source code
marxan_problem.default	Man page Source code
matrix_parameters	Man page
matrix_to_triplet_dataframe	Source code
misc_parameter	Man page Source code
modelsense	Man page
modelsense,OptimizationProblem-method	Man page
ncell	Man page
ncell,OptimizationProblem-method	Man page
ncol	Man page
ncol,OptimizationProblem-method	Man page
ncol,tbl_df-method	Man page
new_id	Man page Source code
new_optimization_problem	Man page Source code
new_waiver	Man page Source code
no_extra_arguments	Source code
nrow	Man page
nrow,OptimizationProblem-method	Man page
nrow,tbl_df-method	Man page
number_of_features	Man page
number_of_features,ConservationProblem-method	Man page
number_of_features,OptimizationProblem-method	Man page
number_of_features,ZonesCharacter-method	Man page
number_of_features,ZonesRaster-method	Man page
number_of_planning_units	Man page
number_of_planning_units,ConservationProblem-method	Man page
number_of_planning_units,OptimizationProblem-method	Man page
number_of_total_units	Man page
number_of_total_units,ConservationProblem-method	Man page
number_of_zones	Man page
number_of_zones,ConservationProblem-method	Man page
number_of_zones,OptimizationProblem-method	Man page
number_of_zones,ZonesCharacter-method	Man page
number_of_zones,ZonesRaster-method	Man page
numeric_matrix_parameter	Man page Source code
numeric_parameter	Man page Source code
numeric_parameter_array	Man page Source code
obj	Man page
obj,OptimizationProblem-method	Man page
objectives	Man page
onUnload	Source code
parallel	Man page
parallelized_extract	Source code
parameters	Man page Source code
penalties	Man page
pipe	Man page
portfolios	Man page
pproto	Man page Source code
predefined_optimization_problem	Man page Source code
print	Man page
print,Id-method	Man page
print,tbl_df-method	Man page
print.ArrayParameter	Man page Source code
print.ConservationModifier	Man page Source code
print.ConservationProblem	Man page Source code
print.Id	Man page Source code
print.OptimizationProblem	Man page Source code
print.ScalarParameter	Man page Source code
print.Solver	Man page Source code
print.Zones	Man page Source code
prioritizr	Man page
prioritizr-deprecated	Man page
prioritizr-package	Man page
problem	Man page
problem,Raster,Raster-method	Man page
problem,Raster,ZonesRaster-method	Man page
problem,Spatial,Raster-method	Man page
problem,Spatial,ZonesCharacter-method	Man page
problem,Spatial,ZonesRaster-method	Man page
problem,Spatial,character-method	Man page
problem,data.frame,ZonesCharacter-method	Man page
problem,data.frame,character-method	Man page
problem,data.frame,data.frame-method	Man page
problem,matrix,data.frame-method	Man page
problem,numeric,data.frame-method	Man page
proportion_parameter	Man page Source code
proportion_parameter_array	Man page Source code
rcpp_add_rij_data	Source code
rcpp_add_zones_constraints	Source code
rcpp_apply_boundary_penalties	Source code
rcpp_apply_connectivity_penalties	Source code
rcpp_apply_contiguity_constraints	Source code
rcpp_apply_decisions	Source code
rcpp_apply_feature_contiguity_constraints	Source code
rcpp_apply_feature_weights	Source code
rcpp_apply_locked_constraints	Source code
rcpp_apply_max_cover_objective	Source code
rcpp_apply_max_features_objective	Source code
rcpp_apply_max_phylo_objective	Source code
rcpp_apply_max_utility_objective	Source code
rcpp_apply_min_set_objective	Source code
rcpp_apply_neighbor_constraints	Source code
rcpp_boundary_data	Source code
rcpp_branch_matrix	Source code
rcpp_forbid_solution	Source code
rcpp_get_optimization_problem_A	Source code
rcpp_get_optimization_problem_col_ids	Source code
rcpp_get_optimization_problem_compressed_formulation	Source code
rcpp_get_optimization_problem_lb	Source code
rcpp_get_optimization_problem_modelsense	Source code
rcpp_get_optimization_problem_ncell	Source code
rcpp_get_optimization_problem_ncol	Source code
rcpp_get_optimization_problem_nrow	Source code
rcpp_get_optimization_problem_number_of_features	Source code
rcpp_get_optimization_problem_number_of_planning_units	Source code
rcpp_get_optimization_problem_number_of_zones	Source code
rcpp_get_optimization_problem_obj	Source code
rcpp_get_optimization_problem_rhs	Source code
rcpp_get_optimization_problem_row_ids	Source code
rcpp_get_optimization_problem_sense	Source code
rcpp_get_optimization_problem_ub	Source code
rcpp_get_optimization_problem_vtype	Source code
rcpp_list_to_matrix_indices	Source code
rcpp_new_optimization_problem	Source code
rcpp_optimization_problem_as_list	Source code
rcpp_predefined_optimization_problem	Source code
rcpp_set_optimization_problem_shuffled	Source code
rcpp_sp_to_polyset	Source code
rcpp_str_tree_to_sparse_matrix	Source code
repr_atomic	Source code
rhs	Man page
rhs,OptimizationProblem-method	Man page
rij_matrix	Man page
rij_matrix,Raster,Raster-method	Man page
rij_matrix,Spatial,Raster-method	Man page
row_ids	Man page
row_ids,OptimizationProblem-method	Man page
run_calculations	Man page Source code
scalar_parameters	Man page
sense	Man page
sense,OptimizationProblem-method	Man page
set_number_of_threads	Man page Source code
show	Man page
show,ConservationModifier-method	Man page
show,ConservationProblem-method	Man page
show,Id-method	Man page
show,OptimizationProblem-method	Man page
show,Parameter-method	Man page
show,Solver-method	Man page
sim_data	Man page
sim_features	Man page
sim_features_zones	Man page
sim_locked_in_raster	Man page
sim_locked_out_raster	Man page
sim_phylogeny	Man page
sim_pu_lines	Man page
sim_pu_points	Man page
sim_pu_polygons	Man page
sim_pu_raster	Man page
sim_pu_zones_polygons	Man page
sim_pu_zones_stack	Man page
simulate_cost	Man page Source code
simulate_data	Man page Source code
simulate_species	Man page Source code
solve	Man page
solve,ConservationProblem,missing-method	Man page
solve,OptimizationProblem,Solver-method	Man page
solvers	Man page
targets	Man page
tee	Man page
tibble-methods	Man page
triplet_dataframe_to_matrix	Source code
ub	Man page
ub,OptimizationProblem-method	Man page
velox_extract	Source code
verify_that	Source code
vtype	Man page
vtype,OptimizationProblem-method	Man page
zone_names	Man page
zone_names,ConservationProblem-method	Man page
zone_names,OptimizationProblem-method	Man page
zone_names,ZonesCharacter-method	Man page
zone_names,ZonesRaster-method	Man page
zones	Man page Source code