mean_comparisons.check_model_bh_intra_location: Get mean comparisons from...

Description Usage Arguments Details Value Author(s) See Also

View source: R/mean_comparisons.check_model_bh_intra_location.R

Description

mean_comparisons performs mean comparisons from object coming from check_model.fit_model_bh_intra_location

Usage

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## S3 method for class 'check_model_bh_intra_location'
mean_comparisons(x, parameter,
  alpha = 0.05, type = 1, get.at.least.X.groups = 2,
  precision = 5e-04, threshold = 1, p.adj = "soft.bonf", ...)

Arguments

x

outputs from check_model.fit_model_bh_intra_location

parameter

parameter on which the mean comparison is done. The possible values are "mu" and "beta"

alpha

level of type one error. 0.05 (5%) by default

type

type of comparisons

  • type = 1 for comparison two by two

  • type = 2 for comparison to a specific threshold

get.at.least.X.groups

For type = 1. If there are only one group with alpha, the minimum number of groups wanted with a higher type one error (i.e. lower confidence). If NULL, nothing is done.

precision

For type = 1. The precision of the alpha with the correspondong groups from get.at.least.X.groups. The smaller the better, but the smaller the more time consuming due to computing matters

threshold

For type = 2. The threshold to which a parameter is different

p.adj

For all except type = 2. NULL for no adjustement of the type one error. p.adj can be "soft.bonf".

p.adj = "soft.bonf" for a soft bonferonni correction to take into account multiple comparisons (alpha / nb of parameters).. The comparisons is based on the probability of having a common distribution for each pair of parameter. When there is only one group with the value of alpha, the function (via get.at.least.X.groups argument) returns at least X groups with a new value of alpha.

...

further arguments passed to or from other methods#'

Details

S3 method. For more details, see in the book : https://priviere.github.io/PPBstats_book/intro-agro.html#section-bayes

Value

A list of three elements :

Author(s)

Pierre Riviere

See Also


priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.