plot.data_network: Plot network object from format_data_PPBstats()
In priviere/PPBstats: An R package to perform analysis found within PPB programmes

Description Usage Arguments Details Value Author(s) See Also

plot.data_network returns ggplot to visualize outputs from format_data_PPBstats()

## S3 method for class 'data_network'
plot(x, data_to_pie = NULL, variable = NULL,
  pie_size = 0.2, plot_type = "network", in_col = "location",
  labels_on = FALSE, labels_size = 4, organize_sl = FALSE,
  x_axis = "germplasm", nb_parameters_per_plot_x_axis = 5,
  nb_parameters_per_plot_in_col = 5, vec_variables = NULL, zoom = 6,
  ...)

`x`	output from `format_data_PPBstats.data_network`
`data_to_pie`	output from format_data_PPBstats with data_type = "data_agro"
`variable`	when data_to_pie is not NULL, variable to plot in a pie
`pie_size`	when data_to_pie is not NULL, size of the pie
`plot_type`	"network", "barplot" or "map"
`in_col`	factor in color that fill the barplot or the vertex of the network. It can be germplasm, location or year
`labels_on`	for plot_type = "network", labels to display on network for each vertex or location for map
`labels_size`	for plot_type = "network", size of the labels
`organize_sl`	for plot_type = "network", if TRUE, organize the network for unipart seed lots format with year in the chronological order on the x axis, location separated on the y axis
`x_axis`	for plot_type = "barplot" and unipart seed lots network, factor on the x axis It can be germplasm, location or year
`nb_parameters_per_plot_x_axis`	for plot_type = "barplot" and unipart seed lots network, number of parameter on the x_axis
`nb_parameters_per_plot_in_col`	for plot_type = "barplot" and unipart seed lots network, number of paramter by color that fill
`vec_variables`	for plot_type = "barplot" and unipart seed lots network, name of a relation type to display
`zoom`	zoom of the map, see ?get_map for more details
`...`	further arguments passed to or from other methods

For network diffusion are represented by a curve. For organize_sl, The representation is possible if the seed_lots are under the following format : GERMPLASM_LOCATION_YEAR_DIGIT.

The seed_lot column from data_to_pie must refer to the seed_lot of the network. The results is a list of two elements for each variable:

nb_received: number of seed lots that end the relation
nb_given: number of seed lots that start the relation

S3 method. See the book for more details : https://priviere.github.io/PPBstats_book/describe-data-network.html

A list with ggplot object. For plot_type = "network", a list with as many elements as net with the network representation in ggplot format For plot_type = "barplot" and bipart network, it represents the number of edges per vertex for each germplasm and each location. For plot_type = "barplot" and unipart network on seed lots, it represents the number of edges per vertex for each germplasm and each location.

Pierre Riviere

format_data_PPBstats

priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.