plot.data_network: Plot network object from format_data_PPBstats()

Description Usage Arguments Details Value Author(s) See Also

View source: R/plot.data_network.R

Description

plot.data_network returns ggplot to visualize outputs from format_data_PPBstats()

Usage

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## S3 method for class 'data_network'
plot(x, data_to_pie = NULL, variable = NULL,
  pie_size = 0.2, plot_type = "network", in_col = "location",
  labels_on = FALSE, labels_size = 4, organize_sl = FALSE,
  x_axis = "germplasm", nb_parameters_per_plot_x_axis = 5,
  nb_parameters_per_plot_in_col = 5, vec_variables = NULL, zoom = 6,
  ...)

Arguments

x

output from format_data_PPBstats.data_network

data_to_pie

output from format_data_PPBstats with data_type = "data_agro"

variable

when data_to_pie is not NULL, variable to plot in a pie

pie_size

when data_to_pie is not NULL, size of the pie

plot_type

"network", "barplot" or "map"

in_col

factor in color that fill the barplot or the vertex of the network. It can be germplasm, location or year

labels_on

for plot_type = "network", labels to display on network for each vertex or location for map

labels_size

for plot_type = "network", size of the labels

organize_sl

for plot_type = "network", if TRUE, organize the network for unipart seed lots format with year in the chronological order on the x axis, location separated on the y axis

x_axis

for plot_type = "barplot" and unipart seed lots network, factor on the x axis It can be germplasm, location or year

nb_parameters_per_plot_x_axis

for plot_type = "barplot" and unipart seed lots network, number of parameter on the x_axis

nb_parameters_per_plot_in_col

for plot_type = "barplot" and unipart seed lots network, number of paramter by color that fill

vec_variables

for plot_type = "barplot" and unipart seed lots network, name of a relation type to display

zoom

zoom of the map, see ?get_map for more details

...

further arguments passed to or from other methods

Details

For network diffusion are represented by a curve. For organize_sl, The representation is possible if the seed_lots are under the following format : GERMPLASM_LOCATION_YEAR_DIGIT.

The seed_lot column from data_to_pie must refer to the seed_lot of the network. The results is a list of two elements for each variable:

S3 method. See the book for more details : https://priviere.github.io/PPBstats_book/describe-data-network.html

Value

A list with ggplot object. For plot_type = "network", a list with as many elements as net with the network representation in ggplot format For plot_type = "barplot" and bipart network, it represents the number of edges per vertex for each germplasm and each location. For plot_type = "barplot" and unipart network on seed lots, it represents the number of edges per vertex for each germplasm and each location.

Author(s)

Pierre Riviere

See Also

format_data_PPBstats


priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.