plot.data_organo_napping: Plot napping object from...
In priviere/PPBstats: An R package to perform analysis found within PPB programmes

Description Usage Arguments Details Value Author(s) See Also

View source: R/plot.data_organo_napping.R

plot.data_napping gets ggplot to describe the data

## S3 method for class 'data_organo_napping'
plot(x, plot_type = "boxplot",
  x_axis = NULL, in_col = NULL, vec_variables = NULL,
  nb_parameters_per_plot_x_axis = 5, nb_parameters_per_plot_in_col = 5,
  labels_on = NULL, labels_size = 4, pie_size = 0.2, zoom = 6, ...)

`x`	The data frame coming from `format_data_PPBstats.data_organo_napping`
`plot_type`	the type of plot you wish. It can be : "pam" for presence abscence matrix that represent the combinaison of germplasm x location "histogramm" "barplot", where sd error are displayed "boxplot" "interaction" "biplot" "radar" "raster" "map"
`x_axis`	factor displayed on the x.axis of a plot. "date_julian" can be choosen: it will display julian day for a given variable automatically calculated from format_data_PPBstats(). This is possible only for plot_type = "histogramm", "barplot", "boxplot" and "interaction".
`in_col`	factor displayed in color of a plot
`vec_variables`	vector of variables to display
`nb_parameters_per_plot_x_axis`	the number of parameters per plot on x_axis arguments
`nb_parameters_per_plot_in_col`	the number of parameters per plot for in_col arguments
`labels_on`	factor to display for plot_type = "biplot"
`labels_size`	size of the label for plot_type = "biplot" and "radar"
`pie_size`	when plot_type = "map" and vec_variables is not NULL, size of the pie
`zoom`	zoom of the map, see ?get_map for more details
`...`	further arguments passed to or from other methods

See the book for more details : https://priviere.github.io/PPBstats_book/napping.html#describe-the-data-3

For plot_type "histogramm", "barplot", "boxplot" or "interaction", the function returns a list with ggplot objects for each variable of vec_variables.
For plot_type "biplot", the function returns a list with ggplot objects for each pairs of variables of vec_variables.
For plot_type "radar" and "raster, the function returns a list with ggplot objects with all variables of vec_variables.
For plot_type "map", it returns a map with location if vec_variables = NULL and labels_on = "location". If vec_variables is not NULL, it displays pie on map.

Each list is divided in several lists according to values of nb_parameters_per_plot_x_axis and nb_parameters_per_plot_in_col except for plot_type = "map".

Pierre Riviere

format_data_PPBstats

priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.