plot.parameter_groups: Get ggplot to visualize output from 'parameter_groups'

In priviere/PPBstats: An R package to perform analysis found within PPB programmes

Description

plot.parameter_groups returns ggplot to visualize outputs from parameter_groups

Usage

## S3 method for class 'parameter_groups'
plot(x, ind_to_highlight = NULL, ...)

Arguments

x	Output from parameter_groups
ind_to_highlight	individual to higlight on the PCA plot
...	further arguments passed to or from other methods

Details

S3 method. See examples for AMMI, GGE and hierarchical bayesian GxE model : https://priviere.github.io/PPBstats_book/family-2.html

Value

It returns list of ggplot object

• pca : a list with three elements on the PCA on the group of parameters :

  • composante_variance : variance caught by each dimension of the PCA

  • ind : graph of individuals

  • var : graph of variables

• clust : output from factextra::fviz_nbclust(). See ?factoextra::fviz_nbclust for more details, a list of number of cluster + 1 element

Author(s)

Pierre Riviere

See Also

parameter_groups

priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.