R/post_hoc_variation_model_GxE.R

In priviere/PPBstats: An R package to perform analysis found within PPB programmes

#' Get dataframe for factors' variation for each variable from a list whose elements are output from \code{\link{check_model.fit_model_GxE}}
#' 
#' @description 
#' \code{post_hoc_variation_model_GxE} returns a dataframe for factors' variation for each variable from a list whose elements are output from \code{\link{check_model.fit_model_GxE}}
#'
#' @param list_out_check_model A list whose elements are output from \code{\link{check_model}}
#' 
#' @return 
#' A dataframe with the following columns: variable, factor and percentage sum of square coming from the model
#' 
#' @author Pierre Riviere
#' 
#' @seealso \code{\link{post_hoc_variation}}
#' 
#' @export
#'
post_hoc_variation_model_GxE = function(list_out_check_model){
  
    d = data.frame()
    for(i in 1:length(list_out_check_model)){
      factor = list_out_check_model[[i]]$data_ggplot$data_ggplot_variability_repartition_pie$factor
      percentage_Sum_sq = list_out_check_model[[i]]$data_ggplot$data_ggplot_variability_repartition_pie$percentage_Sum_sq
      variable = list_out_check_model[[i]]$model_GxE$info$variable
      dtmp = data.frame(variable, factor, percentage_Sum_sq)
      d = rbind.data.frame(d, dtmp)  
    }
    
  return(d)
}