get.table: Get table from 'get.data'

In priviere/shinemas2R_deprecated: An R package to visualize outputs from the data base Seed History and Network Management System (SHiNeMaS)

Description

get.table generates tables object from get.data data-set or ggplot.objet from get.ggplot.

Usage

get.table(data, correlated_group = NULL, merge_g_and_s = FALSE,
  table.type = NULL, table.on = "son", vec_variables = NULL,
  nb_row = NULL, nb_col = NULL, nb_duplicated_rows = 10,
  col_to_display = c("person", "germplasm", "year", "block", "X", "Y"),
  invert_row_col = FALSE)

Arguments

data	It can be either output from get.data or ggplot.object from get.ggplot.
correlated_group	Name of the group of correlation in data. NULL by default meaning that shinemas2R::get.data()$data$data is taken.
merge_g_and_s	Fuse germplasm and selection name information in a column named germplasm. TRUE by default.
table.type	The type of table you wish according to the type of data. For data coming from get.data, it can be: "raw" display raw data. Useful with text for example "mean" display for each variable columns with mean "mean.sd" display for each variable columns with mean and standard deviation "mean.sd.cv" display for each variable columns with mean, standard deviation and coefficient of variation "summary" display "Min.", "1st Qu.", "Median", "3rd Qu.", "Max." of the data
table.on	For "data-" type. father" or "son" depending on which seed-lot you want to display.
vec_variables	Vector of variables displayed
nb_row	The number of rows in the table
nb_col	The number of columns in the table. col_to_display remains fixed.
nb_duplicated_rows	Minimum number of duplicated rows for each variable of a table up to which the information is put in only one row.
col_to_display	Columns to display in the table. It can be a vector with "person", "germplasm", "year", "block", "X" and "Y". If NULL, none of these columns are displayed. The variables follow these columns. For data-S and data-SR type, the column "expe" and "sl_statut" are added by default.
invert_row_col	If TRUE, invert row and col in the table. This is possible only for col_to_display = NULL.

Value

The function returns a list with two elements

• "duplicated_infos" : lists of two elements with seed-lots involved and variable values

• "not_duplicated_infos": a list with the table of non duplicated information

Author(s)

Pierre Riviere

See Also

get.data, get.ggplot

Examples

# See the vignette

priviere/shinemas2R_deprecated documentation built on May 8, 2019, 1:21 p.m.