CVDistD_HC: Distribution of CV of entities

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Distribution of CV of entities

Description

Builds a densityplot of the CV of entities in the Biobase::exprs() table of a object. The CV is calculated for each condition present in the dataset (see the slot 'Condition' in the Biobase::pData() table)

Usage

CVDistD_HC(qData, conds = NULL, pal = NULL)

Arguments

qData	A dataframe that contains quantitative data.
conds	A vector of the conditions (one condition per sample).
pal	xxx

Value

A density plot

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
conds <- Biobase::pData(Exp1_R25_pept)[, "Condition"]
CVDistD_HC(Biobase::exprs(Exp1_R25_pept), conds)
pal <- ExtendPalette(2, "Dark2")
CVDistD_HC(Biobase::exprs(Exp1_R25_pept), conds, pal)

prostarproteomics/DAPAR documentation built on Nov. 26, 2024, 6:32 p.m.