CountPep: Compute the number of peptides used to aggregate proteins
In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R
CountPep R Documentation
Compute the number of peptides used to aggregate proteins
Description
This function computes the number of peptides used to aggregate proteins.
Usage
CountPep(M)
Arguments
M
A "valued" adjacency matrix in which lines and columns correspond
respectively to peptides and proteins.
Value
A vector of boolean which is the adjacency matrix
but with NA values if they exist in the intensity matrix.
Author(s)
Alexia Dorffer
Examples
data(Exp1_R25_pept, package="DAPARdata")
protID <- "Protein_group_IDs"
M <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(10)], protID, FALSE)
CountPep(M)
prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.
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| CountPep | R Documentation |
Compute the number of peptides used to aggregate proteins
Description
This function computes the number of peptides used to aggregate proteins.
Usage
CountPep(M)
Arguments
M |
A "valued" adjacency matrix in which lines and columns correspond respectively to peptides and proteins. |
Value
A vector of boolean which is the adjacency matrix but with NA values if they exist in the intensity matrix.
Author(s)
Alexia Dorffer
Examples
data(Exp1_R25_pept, package="DAPARdata")
protID <- "Protein_group_IDs"
M <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(10)], protID, FALSE)
CountPep(M)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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