Files in psoerensen/qgg

Statistical Tools for Quantitative Genetic Analyses

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/compute_grm.R R/genomic_bayes.R R/genomic_correlation.R R/genomic_matrix.R R/genomic_reml.R R/genomic_score.R R/genomic_simulation.R R/genomic_solve.R R/genomic_statistics.R R/multiple_marker_test.R R/qgg.R R/qgg_utility_functions.R R/single_marker_test.R README.Rmd README.md

Read-and-delete-me

cran-comments.md

docs/authors.html

docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js

docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map

docs/deps/bootstrap-5.2.2/bootstrap.min.css

docs/deps/data-deps.txt

docs/deps/jquery-3.6.0/jquery-3.6.0.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.map

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/acc.html

docs/reference/adjLD.html

docs/reference/adjLDStat.html

docs/reference/adjStat.html

docs/reference/adjustB.html

docs/reference/adjustMapLD.html

docs/reference/auc.html

docs/reference/checkStat.html

docs/reference/computeROC.html

docs/reference/gbayes.html

docs/reference/gblup.html

docs/reference/getG.html

docs/reference/getGRM.html

docs/reference/getLD.html

docs/reference/getLDsets.html

docs/reference/getMap.html

docs/reference/getMarkers.html

docs/reference/getPos.html

docs/reference/getSparseLD.html

docs/reference/gfilter.html

docs/reference/glma.html

docs/reference/gmap.html

docs/reference/gprep.html

docs/reference/greml.html

docs/reference/grm.html

docs/reference/gscore.html

docs/reference/gsea.html

docs/reference/gsim.html

docs/reference/gsolve.html

docs/reference/hwe.html

docs/reference/index.html

docs/reference/ldsc.html

docs/reference/ldscore.html

docs/reference/mapSets.html

docs/reference/mapStat.html

docs/reference/mergeGRM.html

docs/reference/mtadj.html

docs/reference/plotBayes.html

docs/reference/plotForest.html

docs/reference/plotLD.html

docs/reference/plotROC.html

docs/reference/predict_auc_mt_cc.html

docs/reference/predict_auc_mt_continuous.html

docs/reference/predict_auc_st.html

docs/reference/predict_r2_mt.html

docs/reference/predict_r2_st.html

docs/reference/rnag.html

docs/reference/splitWithOverlap.html

docs/search.json

docs/sitemap.xml

inst/extdata/sample_chr1.bed

inst/extdata/sample_chr1.bim

inst/extdata/sample_chr1.fam

inst/extdata/sample_chr2.bed

inst/extdata/sample_chr2.bim

inst/extdata/sample_chr2.fam

man/acc.Rd man/adjLD.Rd man/adjLDStat.Rd man/adjStat.Rd man/adjustB.Rd man/adjustMapLD.Rd man/auc.Rd man/checkStat.Rd man/computeROC.Rd man/gbayes.Rd man/gblup.Rd man/getG.Rd man/getGRM.Rd man/getLD.Rd man/getLDsets.Rd man/getMap.Rd man/getMarkers.Rd man/getPos.Rd man/getSparseLD.Rd man/gfilter.Rd man/glma.Rd man/gmap.Rd man/gprep.Rd man/greml.Rd man/grm.Rd man/gscore.Rd man/gsea.Rd man/gsim.Rd man/gsimC.Rd man/gsimR.Rd man/gsolve.Rd man/hwe.Rd man/ldsc.Rd man/ldscore.Rd man/mapSets.Rd man/mapStat.Rd man/mergeGRM.Rd man/mtadj.Rd man/plotBayes.Rd man/plotForest.Rd man/plotLD.Rd man/plotROC.Rd man/predict_auc_mt_cc.Rd man/predict_auc_mt_continuous.Rd man/predict_auc_st.Rd man/predict_r2_mt.Rd man/predict_r2_st.Rd man/rnag.Rd man/splitWithOverlap.Rd man/writeBED.Rd

qgg.Rproj

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/bedfunc.cpp

src/bigreml.f90

src/gbayes.cpp

src/grsbed.cpp

src/mtgbayes.cpp

src/qgg_init.c

src/solvebed.cpp

src/sparseld.cpp

src/utility.cpp

psoerensen/qgg documentation built on March 9, 2024, 10:02 p.m.