getLDsets: Get marker LD sets
In psoerensen/qgg: Statistical Tools for Quantitative Genetic Analyses
View source: R/genomic_matrix.R
getLDsets R Documentation
Get marker LD sets
Description
Extracts marker LD sets based on a sparse LD matrix stored in the Glist object.
Usage
getLDsets(Glist = NULL, chr = NULL, r2 = 0.5)
Arguments
Glist
A list structure containing information about genotypes stored on disk.
chr
A numeric value specifying the chromosome for which LD sets are to be extracted.
r2
A numeric threshold, defaulting to 0.5, used for extracting LD sets.
psoerensen/qgg documentation built on March 9, 2024, 10:02 p.m.
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View source: R/genomic_matrix.R
| getLDsets | R Documentation |
Get marker LD sets
Description
Extracts marker LD sets based on a sparse LD matrix stored in the Glist object.
Usage
getLDsets(Glist = NULL, chr = NULL, r2 = 0.5)
Arguments
Glist |
A list structure containing information about genotypes stored on disk. |
chr |
A numeric value specifying the chromosome for which LD sets are to be extracted. |
r2 |
A numeric threshold, defaulting to 0.5, used for extracting LD sets. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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