Files in psolymos/opticut

Likelihood Based Optimal Partitioning and Indicator Species Analysis

NEWS.md R/allComb.R R/as.data.frame.multicut.R R/as.data.frame.opticut.R R/as.data.frame.summary.multicut.R R/as.data.frame.summary.opticut.R R/as.data.frame.summary.uncertainty.R R/as.data.frame.uncertainty.R R/bestmodel.R R/bestmodel.multicut.R R/bestmodel.opticut.R R/bestmodel.optilevels.R R/bestpart.R R/bestpart.multicut.R R/bestpart.opticut.R R/bestpart.uncertainty.R R/bestpart.uncertainty1.R R/beta2i.R R/bsmooth.R R/bsmooth.uncertainty.R R/bsmooth.uncertainty1.R R/checkComb.R R/check_strata.R R/col2gray.R R/extractOpticutdot.R R/fitted.multicut.R R/fitted.opticut.R R/fix_levels.R R/getMLE.R R/getMLE.multicut.R R/getMLE.opticut.R R/get_linkinvdot.R R/iquantile.R R/iquantile.lorenz.R R/kComb.R R/lc_cutdot.R R/lcplot.R R/lcplot.multicut1.R R/lorenz.R R/multicut.R R/multicut.default.R R/multicut.formula.R R/multicut1.R R/oComb.R R/occolors.R R/ocoptions.R R/opticut.R R/opticut.default.R R/opticut.formula.R R/opticut1.R R/opticut1dot.R R/opticut_distdot.R R/optilevels.R R/optilevelsdot.R R/parseAssocdot.R R/plot.lorenz.R R/plot.multicut.R R/plot.multicut1.R R/plot.opticut.R R/predict.multicut.R R/predict.opticut.R R/predict_distdot.R R/print.multicut.R R/print.multicut1.R R/print.opticut.R R/print.opticut1.R R/print.summary.lorenz.R R/print.summary.multicut.R R/print.summary.opticut.R R/print.summary.uncertainty.R R/print.uncertainty.R R/print.uncertainty1.R R/quantile.lorenz.R R/rankComb.R R/strata.R R/strata.multicut.R R/strata.opticut.R R/strata.uncertainty.R R/subset.multicut.R R/subset.opticut.R R/subset.uncertainty.R R/summary.lorenz.R R/summary.multicut.R R/summary.opticut.R R/summary.uncertainty.R R/summary_opticutdot.R R/summary_uncertaintydot.R R/uncertainty.R R/uncertainty.multicut.R R/uncertainty.opticut.R R/uncertaintyMulticut1dot.R R/uncertaintyOpticut1dot.R R/wplot.R R/wplot.opticut.R R/wplot.opticut1.R R/zzz.R README.md RELEASE.R extras/bsmooth.R extras/calibrate.R extras/calibration-accuracy.R extras/calibration.R extras/dolina-calibration.R extras/ip/ipredict.R extras/ip/ipredict.multicut.R extras/ip/ipredict.opticut.R extras/lorenz.Rmd extras/multiclass.R extras/opticut-birdrec.Rmd extras/opticut-examples.Rmd extras/opticut-examples.pdf extras/opticut-knitr-example.Rmd extras/opticut-knitr-example.pdf extras/opticut-logo.R extras/opticut-manual-calibration.Rmd extras/opticut-manual-calibration.pdf extras/opticut-manual.Rmd extras/opticut-manual.pdf extras/opticut-paper.Rmd extras/opticut-simuls.R extras/opticut.Rmd extras/youden_index.R man/allComb.Rd man/bestmodel.Rd man/beta2i.Rd man/birdrec.Rd man/dolina.Rd man/lorenz.Rd man/multicut.Rd man/occolors.Rd man/ocoptions.Rd man/opticut-package.Rd man/opticut.Rd man/optilevels.Rd man/rankComb.Rd man/uncertainty.Rd man/warblers.Rd tests/examples.R tests/tests_multicut.R tests/tests_opticut.R