API for ptitle/speciesRaster
Generation of SpeciesRaster Object and Calculation of Morphological and Phylogenetic Metrics
| Global functions | |
|---|---|
| DRstat | Man page Source code |
| FaithPD_branchIndices | Source code |
| LegendreDiffIndex | Source code |
| ListIsEmpty | Source code |
| ListIsEmptyR | Source code |
| addPhylo_speciesRaster | Man page Source code |
| addRasterLegend | Man page Source code |
| addTraits_speciesRaster | Man page Source code |
| betaDiversity2_speciesRaster | Man page Source code |
| betaDiversity_speciesRaster | Man page Source code |
| betaJAC | Source code |
| betaJNE | Source code |
| betaJTU | Source code |
| betaSIM | Source code |
| betaSNE | Source code |
| betaSOR | Source code |
| c_which_char | Source code |
| c_which_int | Source code |
| calcBetaMultiSite | Source code |
| calcBetaMultiSiteBlock | Source code |
| calcBetaPairwise | Source code |
| calcPairwisePhylosor | Source code |
| calcPairwisePhylosor2 | Source code |
| calcPairwiseTaxonomicSorensen | Source code |
| calcPhylosor | Source code |
| calcPhylosor2 | Source code |
| calcRWTurnover_phyloRangeWeighted | Source code |
| calcRWTurnover_phyloRangeWeighted_old | Source code |
| calcRWTurnover_phyloRangeWeighted_singleCell | Source code |
| calcRWTurnover_rangeWeighted | Source code |
| calcRWTurnover_rangeWeighted_old | Source code |
| calcRWTurnover_rangeWeighted_singleCell | Source code |
| calcRWTurnover_taxonomic | Source code |
| calcRWTurnover_taxonomic_old | Source code |
| calcRWTurnover_taxonomic_singleCell | Source code |
| calcTaxonomicTurnoverFromPair | Source code |
| cellAvg | Source code |
| cellMetrics_speciesRaster | Man page Source code |
| characterUnlist | Source code |
| coarsen_speciesRaster | Man page Source code |
| convertNAtoEmpty | Source code |
| countCells | Source code |
| createSpeciesRaster | Man page Source code |
| dropFromSpeciesRaster | Man page Source code |
| dropNeg | Source code |
| expandSpeciesCellList | Man page Source code |
| extractFromSpeciesRaster | Man page Source code |
| faith | Source code |
| flattenMatrix | Source code |
| genRi | Source code |
| getCellFromRowCol | Source code |
| getComponentA | Source code |
| getComponentB | Source code |
| getComponentC | Source code |
| getData_speciesRaster | Man page Source code |
| getExtentOfList | Man page Source code |
| getLeavesForNodes | Source code |
| getMRCA_from_nodeLeaves | Source code |
| getMovingWindowCells | Source code |
| getMultiMapRamp | Man page Source code |
| getPhylo_speciesRaster | Man page Source code |
| getRootToTipEdges | Source code |
| getUnion | Source code |
| identify.speciesRaster | Man page Source code |
| interactiveExtent | Man page Source code |
| intersectList | Source code |
| intersect_int | Source code |
| jaccardDissimilarity | Source code |
| jaccardNestedness | Source code |
| jaccardTurnover | Source code |
| keepMajoritySpecies | Source code |
| mapComm | Source code |
| meanNNdist | Source code |
| mergeLists | Source code |
| minNNdist | Source code |
| multiPrep | Source code |
| multiPrepCpp | Source code |
| naomit | Source code |
| nnDist | Source code |
| phyloBranchRanges | Source code |
| plot.speciesRaster | Man page Source code |
| poly2Raster | Source code |
| print.speciesRaster | Source code |
| pullNeighbor | Source code |
| rasterStackFromOccurrences | Man page Source code |
| rasterStackFromPolyList | Man page Source code |
| rebuildSpeciesRaster | Man page Source code |
| returnTopIndices | Source code |
| setdiff_int | Source code |
| singleSpCellIndex | Man page Source code |
| sort_ | Source code |
| spListPerCell | Source code |
| speciesRaster | Man page |
| speciesRaster-example | Man page |
| speciesRasterToPhyloComm | Man page Source code |
| summary.speciesRaster | Man page Source code |
| tableFromSpeciesRaster | Man page Source code |
| tamiasPolyList | Man page |
| tamiasSpRas | Man page |
| tamiasTraits | Man page |
| tamiasTree | Man page |
| uniqueBranchesForSet | Source code |
| uniqueCommResToFullList | Source code |
| weightedPhylo | Source code |
| whichCpp | Source code |
| writeSpeciesRaster | Man page Source code |
