API for ptitle/speciesRaster
Generation of SpeciesRaster Object and Calculation of Morphological and Phylogenetic Metrics

Global functions
FaithPD_branchIndices Source code
LegendreDiffIndex Source code
ListIsEmpty Source code
ListIsEmptyR Source code
addPhylo_speciesRaster Man page Source code
addRasterLegend Man page Source code
addTraits_speciesRaster Man page Source code
betaDiversity_speciesRaster Man page Source code
betaJAC Source code
betaJNE Source code
betaJTU Source code
betaSIM Source code
betaSNE Source code
betaSOR Source code
c_which_char Source code
c_which_int Source code
calcBetaMultiSite Source code
calcBetaMultiSiteBlock Source code
calcBetaPairwise Source code
calcPhylosor Source code
calcPhylosor2 Source code
calcRWTurnover_phyloRangeWeighted Source code
calcRWTurnover_phyloRangeWeighted_old Source code
calcRWTurnover_phyloRangeWeighted_singleCell Source code
calcRWTurnover_rangeWeighted Source code
calcRWTurnover_rangeWeighted_old Source code
calcRWTurnover_rangeWeighted_singleCell Source code
calcRWTurnover_taxonomic Source code
calcRWTurnover_taxonomic_old Source code
calcRWTurnover_taxonomic_singleCell Source code
cellAvg Source code
cellMetrics_speciesRaster Man page Source code
characterUnlist Source code
coarsen_speciesRaster Man page Source code
convertNAtoEmpty Source code
countCells Source code
createSpeciesRaster Man page Source code
dropNeg Source code
extractFromSpeciesRaster Man page Source code
flattenMatrix Source code
genRi Source code
getCellFromRowCol Source code
getComponentA Source code
getComponentB Source code
getComponentC Source code
getData_speciesRaster Man page Source code
getExtentOfList Man page Source code
getLeavesForNodes Source code
getMRCA_from_nodeLeaves Source code
getMovingWindowCells Source code
getMultiMapRamp Man page Source code
getPhylo_speciesRaster Man page Source code
getRootToTipEdges Source code
getUnion Source code
identify.speciesRaster Man page Source code
intersectList Source code
jaccardDissimilarity Source code
jaccardNestedness Source code
jaccardTurnover Source code
keepMajoritySpecies Source code
mapComm Source code
meanNNdist Source code
mergeLists Source code
minNNdist Source code
multiPrep Source code
multiPrepCpp Source code
naomit Source code
nnDist Source code
phyloBranchRanges Source code
plot.speciesRaster Man page Source code
print.speciesRaster Source code
pullNeighbor Source code
rasterStackFromPolyList Man page Source code
returnTopIndices Source code
sort_ Source code
spListPerCell Source code
speciesRaster Man page
speciesRaster-example Man page
speciesRaster-package Man page
speciesRasterToPhyloComm Man page Source code
summary.speciesRaster Man page Source code
tamiasPolyList Man page
tamiasSpRas Man page
tamiasTraits Man page
tamiasTree Man page
weightedPhylo Source code
whichCpp Source code
writeSpeciesRaster Man page Source code
ptitle/speciesRaster documentation built on July 25, 2018, 9:30 p.m.