speciesRasterToPhyloComm: Convert speciesRaster to community matrix

In ptitle/speciesRaster: Generation of SpeciesRaster Object and Calculation of Morphological and Phylogenetic Metrics

Convert speciesRaster to community matrix

Description

Given specific sites, convert speciesRaster to phylocomm matrix, with sites as rows, and species as columns

Usage

speciesRasterToPhyloComm(x, sites)

Arguments

x	object of class speciesRaster
sites	locations of sites, see details.

Details

If sites are site coordinates, then dataframe or matrix with two columns; if sites are cell indices, then numeric vector; if sites = 'all', then all cells will be returned as sites.

Value

community matrix, with sites as rows and species as columns

Author(s)

Pascal Title

Examples

library(raster)
tamiasSpRas

# from cell indices
cells <- c(22440, 41446, 39283, 37697)
speciesRasterToPhyloComm(tamiasSpRas, cells)

# from coordinates
xy <- xyFromCell(tamiasSpRas[[1]], cells)
speciesRasterToPhyloComm(tamiasSpRas, xy)

ptitle/speciesRaster documentation built on June 11, 2022, 1:35 a.m.